Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4691
         (323 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   1.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   4.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   4.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   4.9  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 152 NQPKEWHKDANKSPDHDQGPSSPAKEGEAFT 244
           N    +H+  +K+ D+D   S  A  GE+FT
Sbjct: 219 NSDDSFHRLTSKTFDNDLRYSELAVAGESFT 249


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 233 PLLWLEMKVLDHDQAIC 183
           P+L++ + VL H Q IC
Sbjct: 9   PVLFVIINVLLHGQVIC 25


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 226 FGWR*RSLIMIRRFVSIFM 170
           FGW+   LI++   VSI M
Sbjct: 397 FGWQMICLIVVIALVSIIM 415


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 6/19 (31%), Positives = 9/19 (47%)
 Frame = +2

Query: 152 NQPKEWHKDANKSPDHDQG 208
           + P ++H     SP H  G
Sbjct: 321 HHPSQYHPHRGSSPHHQHG 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,584
Number of Sequences: 438
Number of extensions: 1585
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)