Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4690
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    30   0.31 
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    28   0.94 
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   3.8  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    26   3.8  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    26   3.8  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   6.6  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   8.8  

>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
 Frame = +2

Query: 71   LYQYII--ILVLELRLGAHVSIT*HMKTMNKATDIITSATANRRCTVNYSLNEIHTLLTI 244
            LY+ +I  I  + ++L  ++ +     ++  A D+      + +C  N+S  +    LTI
Sbjct: 1504 LYEIVISRIRYMAVQLEKNIRVVGLSVSVANARDLGEWLGTSPQCIFNFSPKDRPNPLTI 1563

Query: 245  HIM*SIITNHIPIIVSMYSPMFSLLISFFLIDKLYVDYT 361
            H+    IT+   ++++M  P++  L +F    K  + +T
Sbjct: 1564 HLQSFSITHFPSLMLAMSKPIYRSLKNFISQRKSTIVFT 1602


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 232 CMNLIKRIVDCASTVRRCRSYNISCLIHCFHVLS 131
           CM +   +VDC S VR   S  ++C    +HV S
Sbjct: 815 CMRISSTVVDCVSAVREACS-GVNCHDLIYHVFS 847


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 424 AIKKVMLFYF*RTFDINRVYTRVVNIQLIN*KKTYQKREHW-GIHTYYYGNVI 269
           AIKK +  Y+  TF++N      + IQ+ + KK  +K + + G+     G+V+
Sbjct: 47  AIKKTLNPYWNETFEVNVTDNSTIAIQVFDQKKFKKKGQGFLGVINLRVGDVL 99


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 226 SYIINHTYNVINNNQSHSHNSKYVFPNVLSF 318
           S+   H Y    N    +HN  YVF  V S+
Sbjct: 321 SFYSIHNYTSFTNEMPLTHNRDYVFSRVYSY 351


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = -1

Query: 443 SSSTHLSNKKSNVILFLKNLRHKPCLY----TCSQHTTYQLKKNLSKERTL 303
           + ST   N   N +  +KNL+H PC +    TC+         +L  ER +
Sbjct: 23  AKSTLPKNTPENGVSTVKNLQHVPCKFFRNGTCTAGENCPFSHSLETERPI 73


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 398 FLKNLRHKPCLYTCSQHTTYQL 333
           F+KN    P L TC+Q T Y L
Sbjct: 335 FIKNGFDHPILPTCTQETVYSL 356


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 223 DSYIINHTYNVINNNQSHSHNSKYVFPNVLSFDKFF 330
           D Y +  T N+  N  +  HN  +VF N   F + F
Sbjct: 74  DLYDLIETINIYENRFNSKHNYPWVFLNDEPFTRTF 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,870
Number of Sequences: 5004
Number of extensions: 48554
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)