Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4690
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1288 + 25902264-25902431,25902506-25903090                       30   1.3  
07_03_0832 - 21823518-21823826,21823920-21824070,21824148-218243...    27   9.0  
01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958...    27   9.0  

>08_02_1288 + 25902264-25902431,25902506-25903090
          Length = 250

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +2

Query: 275 IPIIVSMYSPMFSLLISFFLIDKLYVDYTCIDTVYVEGSSK 397
           +P+++ ++ P+ + L S  +I  L+     ID VYV+GSSK
Sbjct: 194 VPLLLWIFGPVLACLCSVVMIPILH----SIDVVYVDGSSK 230


>07_03_0832 -
           21823518-21823826,21823920-21824070,21824148-21824385,
           21824469-21824679,21824789-21825009,21825590-21825697,
           21825813-21826142,21826740-21827050,21828969-21829651
          Length = 853

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -1

Query: 548 CNYTETLELTSQGGWPIYVVNVYGLQ*TLNTRWAVSSSTHLSNKKSNVILFLKNLRHK 375
           CN++++ +L + G  P+Y+  + G +     R    S   L   K+ VIL  K L+H+
Sbjct: 533 CNFSDSNKLGAGGFGPVYMGKLPGGEEVAVKRLCRKSGQGLEEFKNEVILIAK-LQHR 589


>01_07_0019 +
           40494709-40494767,40495619-40495703,40495777-40495836,
           40495934-40496044,40496127-40496204,40496276-40496347,
           40496944-40497057,40498034-40498538,40499011-40499108,
           40499185-40499215,40499346-40499520,40499849-40500008,
           40501436-40501855,40502313-40503203
          Length = 952

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 572 ETHYCFTAEIGGGGG 616
           +T YCF A  GGGGG
Sbjct: 563 QTVYCFAAAAGGGGG 577


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,940,414
Number of Sequences: 37544
Number of extensions: 300622
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)