Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4690
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U70848-3|AAB09111.2|  399|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AC006605-2|AAL00853.1|  139|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z19158-4|CAJ76964.1|  719|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical
           protein C27A7.4 protein.
          Length = 1403

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 247 YNVINNNQSHSHNSKYVFPNVLSFDKF 327
           YN+   +    HNSKY+  NV +F KF
Sbjct: 493 YNLSAKDAQQEHNSKYIIENVKNFYKF 519


>U70848-3|AAB09111.2|  399|Caenorhabditis elegans Hypothetical
           protein C43G2.4 protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 341 KLYV-DYTCIDTVYVEGSSKIK*HYFFYCLDG 433
           +LY  D+ C+  VY + ++     YFF+CL G
Sbjct: 221 RLYCHDWVCVPLVYTQVAALATYSYFFFCLFG 252


>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 260 IITNHIPIIVSM-YSPMFSLLISFFLIDKLYVDYTCIDTVYVEGSSKIK*HYFFYC 424
           I+ + + I +S+ Y    SL+ S  L   LY+DY C     +  S  I  +YF+YC
Sbjct: 151 ILFSTVAICISLVYGSKPSLIKSIVLQLSLYLDY-CCHFFSIAISFVITLNYFYYC 205


>AC006605-2|AAL00853.1|  139|Caenorhabditis elegans Hypothetical
           protein C07H6.9 protein.
          Length = 139

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 341 KLYVDYTCIDTVYVEGSSKI 400
           K+ VD +C  T+Y  GSSKI
Sbjct: 72  KMVVDVSCFGTIYFVGSSKI 91


>Z19158-4|CAJ76964.1|  719|Caenorhabditis elegans Hypothetical
           protein T23G5.2a protein.
          Length = 719

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 453 PGVKCLLEPIDIYNVNGPPTL 515
           PGV+CLL+ I+I   N P T+
Sbjct: 409 PGVQCLLKIIEIVEANYPETM 429


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,741,413
Number of Sequences: 27780
Number of extensions: 282314
Number of successful extensions: 728
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)