Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4689
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0576 - 18888702-18890165                                         30   2.0  
11_06_0468 - 23953075-23953093,23954046-23955106                       28   6.0  
05_03_0228 - 10662930-10663417,10663482-10663632                       28   6.0  

>10_08_0576 - 18888702-18890165
          Length = 487

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +2

Query: 485 WTSASGPSSAYLACYQQLL*IVTSLSGNMSKELETPPRVSPLSFSPD 625
           W+ A+ PSS   +  ++    +TSL   M  EL    RV PL  SPD
Sbjct: 327 WSGAAAPSSPSASWSRRCRISLTSLERPMRDELGLGLRVLPLCTSPD 373


>11_06_0468 - 23953075-23953093,23954046-23955106
          Length = 359

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +1

Query: 448 SPGLSCATPASVLDFCLRAFFRIPC-LLPAASLNCHL----SFWQYVQRTRNSSPR*PTE 612
           SP L  ATPA+  D+C  A     C ++      C+      + +  + T+N S    TE
Sbjct: 10  SPPLLTATPAAADDYCGSADSPAACTIVGKVERVCYNVRVDGYSKTKETTKNGSYIASTE 69

Query: 613 FLAGSSQW 636
           F+AG   W
Sbjct: 70  FVAGGEPW 77


>05_03_0228 - 10662930-10663417,10663482-10663632
          Length = 212

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 424 GHGLL*QLSPGLSCATPASVLDFCLRAFFRIPCL 525
           G G+L  LSPGL+CA   SV  F      R+ CL
Sbjct: 64  GQGILSSLSPGLTCAIGLSV--FLSTVLQRMGCL 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,051,858
Number of Sequences: 37544
Number of extensions: 353402
Number of successful extensions: 932
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)