Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4689
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    31   0.58 
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    31   0.58 
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    31   0.58 
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    31   0.58 
U30943-1|AAC47116.1|  192|Caenorhabditis elegans cyclophilin-1 p...    29   3.1  
AL033512-4|CAA22075.1|  192|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z81503-4|CAB04110.2|  282|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z22174-1|CAA80128.1|  732|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U88184-14|AAK31520.1|  821|Caenorhabditis elegans Hypothetical p...    27   9.5  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 592 RSFEFFGHIARKRGDNLEKLLVTGKVCG-RRPGGRSPIRWQE 470
           R   + GH+AR++      L+   +  G +RP GR P+RW +
Sbjct: 810 RKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTD 851


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 592  RSFEFFGHIARKRGDNLEKLLVTGKVCG-RRPGGRSPIRWQE 470
            R   + GH+AR++      L+   +  G +RP GR P+RW +
Sbjct: 985  RKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTD 1026


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 592 RSFEFFGHIARKRGDNLEKLLVTGKVCG-RRPGGRSPIRWQE 470
           R   + GH+AR++      L+   +  G +RP GR P+RW +
Sbjct: 724 RKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTD 765


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 592 RSFEFFGHIARKRGDNLEKLLVTGKVCG-RRPGGRSPIRWQE 470
           R   + GH+AR++      L+   +  G +RP GR P+RW +
Sbjct: 336 RKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTD 377


>U30943-1|AAC47116.1|  192|Caenorhabditis elegans cyclophilin-1
           protein.
          Length = 192

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -1

Query: 598 AGR-SFEFFGHIARKRGDNLEKLLVTGKVCGRRPGGRSPIRWQEWRRIIQEKVVRGGHDL 422
           AGR + E F  +  K  +N   L    K  G + G     +  ++ RII E +++GG   
Sbjct: 35  AGRVTMELFNDVVPKTAENFRALCTGEKGVGEQ-GVALHFKGSKFHRIIPEFMIQGGDFT 93

Query: 421 QH*GLSTQGV 392
           +H G   + +
Sbjct: 94  RHNGTGGESI 103


>AL033512-4|CAA22075.1|  192|Caenorhabditis elegans Hypothetical
           protein Y49A3A.5 protein.
          Length = 192

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -1

Query: 598 AGR-SFEFFGHIARKRGDNLEKLLVTGKVCGRRPGGRSPIRWQEWRRIIQEKVVRGGHDL 422
           AGR + E F  +  K  +N   L    K  G + G     +  ++ RII E +++GG   
Sbjct: 35  AGRVTMELFNDVVPKTAENFRALCTGEKGVGEQ-GVALHFKGSKFHRIIPEFMIQGGDFT 93

Query: 421 QH*GLSTQGV 392
           +H G   + +
Sbjct: 94  RHNGTGGESI 103


>Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical
           protein F57G9.3 protein.
          Length = 247

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 34  DSQEVLPPVMFLGTYVYYFVLCNILKCIR*KEK 132
           D+ +V   ++ + TY++  +LC+ L CIR  E+
Sbjct: 35  DTAQVASCIVVIITYIFLIILCSPLPCIRTPEE 67


>Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical
           protein ZK270.1 protein.
          Length = 983

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query: 445 LSPGLSCATPASVLDFCLRAFFRIPCLLP--AASLNCHLSF-----WQYVQRTRNSSPR 600
           L+P L+CAT  +++  C   F  I C++P    S+    S+     WQ V +    +PR
Sbjct: 354 LTPLLACATALALMFLCGVRFASILCVIPFLVLSIGVDSSYLMIHEWQRVTKHMRETPR 412


>Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical
           protein ZK270.1 protein.
          Length = 983

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query: 445 LSPGLSCATPASVLDFCLRAFFRIPCLLP--AASLNCHLSF-----WQYVQRTRNSSPR 600
           L+P L+CAT  +++  C   F  I C++P    S+    S+     WQ V +    +PR
Sbjct: 354 LTPLLACATALALMFLCGVRFASILCVIPFLVLSIGVDSSYLMIHEWQRVTKHMRETPR 412


>Z81503-4|CAB04110.2|  282|Caenorhabditis elegans Hypothetical
           protein F14F7.4 protein.
          Length = 282

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -2

Query: 336 CLNR*IHFHIYLP----FKPSLEFYK*FKTKISRIGP 238
           C+   + FH+YL     F  SLE  K FKTK S I P
Sbjct: 56  CITAYLLFHLYLAYILVFAVSLEVLKKFKTKGSGIAP 92


>Z22174-1|CAA80128.1|  732|Caenorhabditis elegans Hypothetical
           protein K01B6.1 protein.
          Length = 732

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 488 TSASGPSSAYLACYQQLL*IVTSLSGNMSKELETPPRVSPLSFSPDL 628
           TSAS  S   L           +  GN   + E+PP  +P  F+PDL
Sbjct: 39  TSASDASMEMLTSLMNGAVAAAAAPGNALVKQESPPLTTPPLFNPDL 85


>U88184-14|AAK31520.1|  821|Caenorhabditis elegans Hypothetical
           protein F36H5.1 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 571 HIARKRGDNLEKLLVTGKVCGRRPGGRSPIRWQEWRRIIQ 452
           ++    G+N  +   T K+C  +PGG+  I++ +W  +I+
Sbjct: 490 NLVSTNGNNFRR---TSKLCFEKPGGQGIIKFIKWNDMIE 526


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,432,514
Number of Sequences: 27780
Number of extensions: 303696
Number of successful extensions: 737
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)