Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4689
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.3  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 210 NSNSFLYI*ILLLMRNDNLIDLQCYLFFLLSYTFQNIAQHKIIHVG 73
           N N  L   + ++++ D    ++  L    +YT+  I Q  I+H G
Sbjct: 470 NKNKNLTPAVNIIVKGDVAGSVEALLDIFDTYTYDTICQLNIVHYG 515


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 31  ADSQEVLPPVMFLGTYVYYFVLCNI 105
           A SQ  LPPV +L     +  +C +
Sbjct: 292 AKSQASLPPVSYLKAVDAFMSVCTV 316


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 161 ITLLTFNVIYFSFYLI 114
           ++ + FN IY+ FY++
Sbjct: 474 VSFMLFNAIYWIFYVL 489


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 130 FPFILYISEYCTTQ 89
           F F+LY+S + TT+
Sbjct: 229 FSFLLYVSGFITTE 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,725
Number of Sequences: 438
Number of extensions: 4114
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)