Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4688
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    32   0.078
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    29   0.96 
SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|...    28   1.7  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    26   6.8  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   9.0  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    25   9.0  
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    25   9.0  

>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 32.3 bits (70), Expect = 0.078
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
 Frame = +2

Query: 458 NQFCSAHTLHEVYIDLFDQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESI-RKNY 634
           NQ  +A+T      D+ + ++  L  A + +  E A  + +   RV  P+  E I R+N 
Sbjct: 640 NQAATANTNTVSETDI-EALERRLSKAYRMEAQEEAYAINIGGGRVISPEELEEIARRNV 698

Query: 635 ELMEAEKSKLLIAAQHQKVVEKEAETARRKAIIGSRKR 748
           + M +E S+   AAQ ++  E+  E  R K +    KR
Sbjct: 699 DPMVSELSER--AAQERERKEQAKEAKRLKKLAKEEKR 734


>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = +2

Query: 272 QTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHH 451
           QT LQ +   N     +   L+  E I+ V +  P    D++++  A Y  TLI NK+  
Sbjct: 13  QTALQPNSYVNFDAQQTSSTLLPVEVIDSVMQYLPAH--DVIQSSFASYPLTLIANKIIR 70

Query: 452 ELNQFCSAHTLHEVYIDLF 508
               F   ++L     D++
Sbjct: 71  ARLSFLDEYSLRVFAKDVY 89


>SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 177

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 436 ENKSPVIFSCEVAHHI*YALWVQLIDYLDSF 344
           + + PV F   V  H+  + W++L DY+ +F
Sbjct: 48  QGQKPVTFFGSVTEHVSNSWWIKLYDYMMTF 78


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 19/93 (20%), Positives = 42/93 (45%)
 Frame = +2

Query: 239 MIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEY 418
           + P  TS   ++T L   E  +      G +L+Y   + ++N ++ +S+LD     +   
Sbjct: 295 LFPEATSMLVVETVLP--EGPSFKKLKEGDILLYVNSMILINLIELESILDE----SVGK 348

Query: 419 DRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQI 517
           D  L   +    +   C+A + H++  D + ++
Sbjct: 349 DVVLTVQRGSELVELTCTAQSTHDIAPDRYVEV 381


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +2

Query: 614 ESIRKNYELMEAEKSKLLIAAQHQKVVEKEAETARRKAII 733
           E + +   L E E+ ++L   + ++ ++KE E  RR+ ++
Sbjct: 685 EKMAREQRLREEEEKRILEERKRREKLDKEEEERRRRELL 724


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 668 IAAQHQKVVEKEAETARRKAIIGSRKR 748
           + AQH ++ + E E  R KA   SRKR
Sbjct: 354 LEAQHVQIKQIELEIERLKAATSSRKR 380


>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 187 INTNMSFFYFMKGKMNRDPYSQNHNGQNRRLVSHS 83
           + T++ F  F+KGK   D +    +G+    V HS
Sbjct: 153 VETDLHFICFVKGKSKDDNHFYELDGRQEGPVQHS 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,554
Number of Sequences: 5004
Number of extensions: 61568
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)