Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4688
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0110 - 17357323-17357403,17357487-17357595,17357737-173579... 238 4e-63
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333... 29 3.1
11_06_0595 - 25368114-25370051 29 4.1
11_04_0166 + 14317129-14317962,14318042-14318809,14319008-143197... 29 4.1
08_02_0838 - 21662721-21662759,21672016-21673355,21673566-21674505 29 4.1
04_01_0129 + 1408408-1409055,1409107-1410013,1410145-1410294,141... 29 4.1
07_03_0375 + 17408815-17409035,17422820-17423477,17423780-174241... 29 5.4
12_02_0534 - 20103908-20105897,20106314-20107116 28 9.4
01_05_0013 - 17156017-17157647,17157977-17158144,17160064-171601... 28 9.4
>03_04_0110 -
17357323-17357403,17357487-17357595,17357737-17357906,
17358503-17358649,17358767-17358925,17359410-17359469,
17359659-17359705,17359786-17359888,17362640-17363080
Length = 438
Score = 238 bits (582), Expect = 4e-63
Identities = 109/204 (53%), Positives = 151/204 (74%)
Frame = +2
Query: 152 LHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGV 331
LH+V EGHVGVY+RGGALL + GFH+ +P +T ++ IQ V+N+PCGT GGV
Sbjct: 157 LHQVPEGHVGVYWRGGALLETITPPGFHVKLPWITQFEPIQ-------VRNIPCGTKGGV 209
Query: 332 LIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYIDLFD 511
+I F++IEVVN+L + V + + N+ YD+T I++K+HHE+NQFCSAH+L +VYIDLFD
Sbjct: 210 MISFDKIEVVNRLHKEFVHETLLNYGVHYDKTWIYDKIHHEINQFCSAHSLQQVYIDLFD 269
Query: 512 QIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRKNYELMEAEKSKLLIAAQHQKV 691
QIDE ++ A+Q+D APG+ + +VRVTKP IP+SIR+N+ELME E++K LIA + QKV
Sbjct: 270 QIDETMKEAIQRDCTRYAPGIEIISVRVTKPNIPDSIRRNFELMEEERTKALIAIEKQKV 329
Query: 692 VEKEAETARRKAIIGSRKRGPCSK 763
EKEAET ++ A+ + K SK
Sbjct: 330 AEKEAETQKKIALSEAEKNAQVSK 353
>12_02_0723 -
22532379-22532902,22533060-22533135,22533195-22533380,
22533459-22534323,22534740-22534918,22535168-22535542
Length = 734
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 434 FNKVHHELNQFCSAHTLHEVYIDLFDQIDENLR 532
F KV + N+F + H +H V D+ DQ+ + L+
Sbjct: 96 FKKVTNLFNKFKTNHQIHGVMKDIMDQVKKELK 128
>11_06_0595 - 25368114-25370051
Length = 645
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 490 LVQGMGTTELIQFMVHFIENKSPV 419
+ +G GT E+I+F V FIE+ P+
Sbjct: 327 IAKGYGTEEVIEFCVEFIEDLRPI 350
>11_04_0166 +
14317129-14317962,14318042-14318809,14319008-14319740,
14353399-14353892,14353971-14354417,14354505-14355110,
14355204-14355391,14355470-14355640,14355723-14355810
Length = 1442
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 490 LVQGMGTTELIQFMVHFIENKSPV 419
+ +G GT E+I+F V FIE+ P+
Sbjct: 614 IAKGYGTEEVIEFCVEFIEDLRPI 637
>08_02_0838 - 21662721-21662759,21672016-21673355,21673566-21674505
Length = 772
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 490 LVQGMGTTELIQFMVHFIENKSPV 419
+ +G GT E+I+F V FIE+ P+
Sbjct: 713 IAKGYGTEEVIEFCVEFIEDLRPI 736
>04_01_0129 +
1408408-1409055,1409107-1410013,1410145-1410294,
1419174-1419634,1419683-1419999,1420114-1420477
Length = 948
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 490 LVQGMGTTELIQFMVHFIENKSPV 419
+ +G GT E+I+F V FIE+ P+
Sbjct: 675 IAKGYGTEEVIEFCVEFIEDLRPI 698
>07_03_0375 +
17408815-17409035,17422820-17423477,17423780-17424161,
17424236-17424550,17424727-17425118,17432479-17432508
Length = 665
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 490 LVQGMGTTELIQFMVHFIENKSPV 419
+ +G GT E+I+F + FIE+ P+
Sbjct: 632 IAKGCGTEEVIEFCIEFIEDLRPI 655
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 27.9 bits (59), Expect = 9.4
Identities = 23/100 (23%), Positives = 46/100 (46%)
Frame = +2
Query: 434 FNKVHHELNQFCSAHTLHEVYIDLFDQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIP 613
F KV + N+F + H +H V D+ DQ+ + + ++D + + V ++
Sbjct: 96 FKKVTNLFNKFKTNHQIHGVMKDIMDQVK---KVSERRDRYIVDDNAARPTVVDVDSRLE 152
Query: 614 ESIRKNYELMEAEKSKLLIAAQHQKVVEKEAETARRKAII 733
RK EL+ K K + Q ++E + ++++ II
Sbjct: 153 AMYRKATELIGISKPKNELTKQ---LLEYDGSSSQQSNII 189
>01_05_0013 -
17156017-17157647,17157977-17158144,17160064-17160113,
17160796-17160833,17161102-17161212
Length = 665
Score = 27.9 bits (59), Expect = 9.4
Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 1/130 (0%)
Frame = +2
Query: 356 VVNKLDPQSVLDMVRNFTAE-YDRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQIDENLR 532
+V +L + +D + + ++ ++H EL + + D +D+ R
Sbjct: 383 IVEQLSDYAPIDFTNDRRTHCFPEAVVGLRIHDELAIDAARMPGNRTIQDFRRMLDDAYR 442
Query: 533 TALQKDLHEMAPGLRVQAVRVTKPKIPESIRKNYELMEAEKSKLLIAAQHQKVVEKEAET 712
+Q + E + AV + P SIRK L + + ++++ + +E EAE
Sbjct: 443 GRIQMIIEEEE---KAAAVALGTPT-QGSIRKKSALKDDKPRLVIVSRNGSRAIENEAEL 498
Query: 713 ARRKAIIGSR 742
R A G R
Sbjct: 499 VRAAAGAGFR 508
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,674,969
Number of Sequences: 37544
Number of extensions: 364415
Number of successful extensions: 845
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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