Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4688
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CU457741-16|CAM36358.1| 312|Caenorhabditis elegans Hypothetical... 303 8e-83
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 39 0.003
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 39 0.003
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 38 0.006
AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protei... 31 1.2
Z73427-6|CAA97798.2| 410|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 4.8
U80836-9|AAB37895.1| 303|Caenorhabditis elegans Hypothetical pr... 29 4.8
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 29 4.8
U61954-5|AAK29812.1| 575|Caenorhabditis elegans Hypothetical pr... 28 6.3
AF000262-7|AAN60523.1| 544|Caenorhabditis elegans Hypothetical ... 28 6.3
>CU457741-16|CAM36358.1| 312|Caenorhabditis elegans Hypothetical
protein C42C1.15 protein.
Length = 312
Score = 303 bits (744), Expect = 8e-83
Identities = 144/214 (67%), Positives = 174/214 (81%), Gaps = 1/214 (0%)
Frame = +2
Query: 107 LAIVILAVGVTVHF-SLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTL 283
LA+ + A+ + + +LHK+EEGHVGVYYRGGALL + G+HM IP LT+ K++Q TL
Sbjct: 5 LALGLFALWIAIFSQALHKIEEGHVGVYYRGGALLKAVTNPGYHMHIPFLTTVKSVQVTL 64
Query: 284 QTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQ 463
QTDE NVPCGTSGGVLIYF+RIEVVN L SV +V+N+T +YDR LIFNKVHHE+NQ
Sbjct: 65 QTDEATNVPCGTSGGVLIYFDRIEVVNFLSQDSVYAIVKNYTVDYDRPLIFNKVHHEVNQ 124
Query: 464 FCSAHTLHEVYIDLFDQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRKNYELM 643
FCS HTL EVYIDLFD+IDE ++ ALQ+DL +MAPGL VQAVRVTKPKIPE+IR NYE M
Sbjct: 125 FCSVHTLQEVYIDLFDKIDEEIKNALQEDLVKMAPGLYVQAVRVTKPKIPEAIRLNYEKM 184
Query: 644 EAEKSKLLIAAQHQKVVEKEAETARRKAIIGSRK 745
EAEK+KLL+A + QKVVEK AET R+KA+I + K
Sbjct: 185 EAEKTKLLVAQETQKVVEKLAETERKKAVIEAEK 218
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 39.1 bits (87), Expect = 0.003
Identities = 35/172 (20%), Positives = 74/172 (43%)
Frame = +2
Query: 113 IVILAVGVTVHFSLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTD 292
++ L V+V + V+E V +R G L+P G +IP + ++ I + +
Sbjct: 51 LIFLTFPVSVFMCIKIVQEYQRAVVFRLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASY 110
Query: 293 EVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCS 472
V + + V + + + DP + + V N T D T + + L
Sbjct: 111 NVPSQEILSRDSVTVSVDAVVYFKVFDPITSVVGVGNAT---DSTKLLAQT--TLRTILG 165
Query: 473 AHTLHEVYIDLFDQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRK 628
HTL E+ D ++I +++ +L + G++V+ V + ++P +++
Sbjct: 166 THTLSEILSDR-EKISADMKISLDEATEPW--GIKVERVELRDVRLPSQMQR 214
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 39.1 bits (87), Expect = 0.003
Identities = 35/172 (20%), Positives = 74/172 (43%)
Frame = +2
Query: 113 IVILAVGVTVHFSLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTD 292
++ L V+V + V+E V +R G L+P G +IP + ++ I + +
Sbjct: 51 LIFLTFPVSVFMCIKIVQEYQRAVVFRLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASY 110
Query: 293 EVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCS 472
V + + V + + + DP + + V N T D T + + L
Sbjct: 111 NVPSQEILSRDSVTVSVDAVVYFKVFDPITSVVGVGNAT---DSTKLLAQT--TLRTILG 165
Query: 473 AHTLHEVYIDLFDQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRK 628
HTL E+ D ++I +++ +L + G++V+ V + ++P +++
Sbjct: 166 THTLSEILSDR-EKISADMKISLDEATEPW--GIKVERVELRDVRLPSQMQR 214
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
F21C10.7 protein.
Length = 2541
Score = 38.3 bits (85), Expect = 0.006
Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
Frame = +2
Query: 353 EVVNKLDP-QSVLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQIDENL 529
E V+K++ + V + +++ T E + L K+ E I++ D
Sbjct: 852 EFVHKMEEVEHVQEQLKHLTVELEEKLEQQKLVKVTEHI---QMWQEEMIEIIKMFDSTP 908
Query: 530 RTALQK--DLHEMAPGLRVQAVRVTKPKIPESIRKNYELMEAEKSKLLIAAQHQKVVEKE 703
+Q+ +L E ++ +A+ V +PKI + + K ++ A K+++ A + QKV+ +
Sbjct: 909 MKTVQESQELQEKVKLVK-EAIEVQQPKIEDVVAKARDI--AVKTQISRAVEKQKVIREM 965
Query: 704 AETARRKAI 730
AET RKAI
Sbjct: 966 AETLERKAI 974
>AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protein 4
protein.
Length = 741
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +2
Query: 371 DPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQIDENLRTALQKD 550
DP + ++R F ++Y+R F+ +L F A T H+V D I ++ TA ++
Sbjct: 43 DPSDMFVIIRFFVSDYERFRKFDMGPTKLASF-MAKTFHDVRADYVSTISKDASTAARQL 101
Query: 551 LHEMAPGLRVQ 583
+++ R +
Sbjct: 102 AEKISEEYRTE 112
>Z73427-6|CAA97798.2| 410|Caenorhabditis elegans Hypothetical
protein F58B3.6 protein.
Length = 410
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 500 DLFDQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRKNYELMEAEKSKL 664
D++DQ+ +NL A K+ GL + +T PE I +N E + A S++
Sbjct: 53 DVYDQLVDNLDRAQDKNSTTRIDGLHRVNLALTAKPAPEFINRNKETIMAVCSRM 107
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = +2
Query: 509 DQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRKNYELMEAEKSKLLIAAQHQK 688
D + T QK + ++ P +++ V +PK+ K+ E EK +++ + +K
Sbjct: 1848 DSVISEAVTVGQKSVDQVDPVEQLEPVEPVEPKLEVKQLKDEATEEEEKRTIILPDETEK 1907
Query: 689 VVE 697
V+E
Sbjct: 1908 VIE 1910
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = +2
Query: 509 DQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRKNYELMEAEKSKLLIAAQHQK 688
D + T QK + ++ P +++ V +PK+ K+ E EK +++ + +K
Sbjct: 1848 DSVISEAVTVGQKSVDQVDPVEQLEPVEPVEPKLEVKQLKDEATEEEEKRTIILPDETEK 1907
Query: 689 VVE 697
V+E
Sbjct: 1908 VIE 1910
>U80836-9|AAB37895.1| 303|Caenorhabditis elegans Hypothetical
protein B0432.10 protein.
Length = 303
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = +2
Query: 344 ERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQIDE 523
+++ + N+ +++++ TA+YD ++ H L Q + +H+ L I+E
Sbjct: 164 QQLSLANETMENRMIEVLMEATAKYDDIVVIRHSFHRLIQLAQTYRMHK----LMRVIEE 219
Query: 524 NL 529
NL
Sbjct: 220 NL 221
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = +2
Query: 509 DQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRKNYELMEAEKSKLLIAAQHQK 688
D + T QK + ++ P +++ V +PK+ K+ E EK +++ + +K
Sbjct: 1848 DSVISEAVTVGQKSVDQVDPVEQLEPVEPVEPKLEVKQLKDEATEEEEKRTIILPDETEK 1907
Query: 689 VVE 697
V+E
Sbjct: 1908 VIE 1910
>U61954-5|AAK29812.1| 575|Caenorhabditis elegans Hypothetical
protein F41H10.4 protein.
Length = 575
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 569 GLRVQAVRVTKPKIPESIRKNYELMEAEKSKLLIAAQHQKVVEKEA 706
GL + + + ++ + +NYEL E K K A+QHQ + EA
Sbjct: 7 GLSKEEFLLVQEQLLQLKNENYELREEIKKKNAAASQHQNSPKNEA 52
>AF000262-7|AAN60523.1| 544|Caenorhabditis elegans Hypothetical
protein C48E7.2 protein.
Length = 544
Score = 28.3 bits (60), Expect = 6.3
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Frame = +2
Query: 353 EVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYID-------LFD 511
E V KL S + A + +FNK N F A T + Y+D L +
Sbjct: 384 EQVEKLSMMSGKEAREMLYALVEEGYVFNKPVGRSNDFQPARTFYLYYVDLPRTIRGLVE 443
Query: 512 QIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESIRKNYELMEAEK 655
+ +R + + HE V I E+IR + +L EA K
Sbjct: 444 YTCKLVRNLIVRQRHERTENKSVLDKDANVQPIIENIRSSEQLDEASK 491
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,610,803
Number of Sequences: 27780
Number of extensions: 344473
Number of successful extensions: 735
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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