Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4685
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    27   0.82 
SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38 |...    26   1.1  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    23   7.7  

>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 26.6 bits (56), Expect = 0.82
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 262 FATNLVFASINELIFPKTNPSTAFLTPNFA 173
           F  N +   I  LI PK N  TA + P+FA
Sbjct: 226 FIVNGIEKLIRMLILPKRNHPTAIIRPSFA 255


>SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 72  RSRRQLADDDALQPLQEVGDEQ 137
           RSR QL D D L+PL    DE+
Sbjct: 168 RSRLQLEDLDLLEPLSSSSDEE 189


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 305 DAVLLVELDVLPVQVRYELSLRVDQ 231
           D   L  LD LPV   +EL LR  Q
Sbjct: 381 DGTELDTLDELPVDYEFELKLRKKQ 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 670,212
Number of Sequences: 5004
Number of extensions: 8054
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)