Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4685
         (305 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426...    29   0.95 
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576...    27   2.2  
08_01_1007 - 10201181-10201298,10202180-10202484,10202577-102027...    26   5.1  
12_01_0727 + 6446283-6449300                                           26   6.7  
01_01_0869 + 6786136-6788577                                           26   6.7  
07_03_1150 - 24375859-24376050,24376173-24376283,24376488-243766...    25   8.9  

>03_04_0161 +
           17838466-17838551,17842379-17842445,17842537-17842662,
           17842756-17842886,17843121-17843220,17843334-17843466,
           17843500-17843544,17843545-17843608,17843692-17844469,
           17844897-17845229,17845427-17845634,17845733-17845809,
           17846168-17846240,17846343-17846413,17846597-17846716,
           17846815-17846879,17846974-17847124
          Length = 875

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 99  DALQP-LQEVGDEQLREKRKLEGITQAKFGVKNAVLGFVFGKIN 227
           D L P L+E+  EQ++EK +LEG  Q   G  N +  F+F  ++
Sbjct: 190 DLLLPWLKELQQEQMKEK-ELEGRLQGIGGFSNCLFTFLFAGVS 232


>11_06_0557 -
           24955837-24956214,24957225-24957395,24957576-24957635,
           24958419-24958623,24958710-24958953,24959103-24959394,
           24959734-24960828,24960915-24961409,24961665-24961823,
           24961893-24962387
          Length = 1197

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 159 EGITQAKFGVKNAVLGFVFGKINSLIDAKTKFVANLDRQNIELN 290
           EG+T A   +   ++ F   ++N++I    +   N DR N+E+N
Sbjct: 845 EGLTNAAGRLNVGIVCFCSNQVNAIITQLGRKYQNHDRVNLEVN 888


>08_01_1007 -
           10201181-10201298,10202180-10202484,10202577-10202726,
           10202954-10202956
          Length = 191

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 156 LEGITQAKFGVKNAVLGFVFGKINSL--IDAKTKFVANLDRQNIE 284
           LEGIT     ++ A L   FG+++S+  ID+  KF  +++   I+
Sbjct: 7   LEGITCKFENLREASLNIDFGQLSSVLSIDSLLKFAPHIEHLEIQ 51


>12_01_0727 + 6446283-6449300
          Length = 1005

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 304 MPYCLLSSMFCRSRFATNLVFASINELIFPK-TNPSTAFL 188
           MPYC LS   CRS   ++L   S+ EL F + + P   FL
Sbjct: 238 MPYCSLSGPICRS--LSSLRSLSVIELHFNQLSGPVPEFL 275


>01_01_0869 + 6786136-6788577
          Length = 813

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -1

Query: 266 QVRYELSLRVDQRVDFPEDEPEHCV 192
           QVRY++++ + + + +  +E EHC+
Sbjct: 603 QVRYQIAIGIARGLAYLHEECEHCI 627


>07_03_1150 -
           24375859-24376050,24376173-24376283,24376488-24376655,
           24376850-24377451,24377546-24377648,24378461-24378610,
           24379918-24379956
          Length = 454

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 78  RRQLADDDALQPLQEVGDEQLREKRKLEG 164
           RR   +  A+Q +QE+  +  +E+RKL G
Sbjct: 336 RRSCIEQAAIQQIQELEAQVSKEQRKLSG 364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,738,251
Number of Sequences: 37544
Number of extensions: 57342
Number of successful extensions: 206
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)