Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4685
(305 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z11901-1|CAA77953.1| 359|Homo sapiens octamer binding protein 3... 28 4.6
DQ486513-1|ABF29403.1| 359|Homo sapiens POU domain transcriptio... 28 4.6
DQ120688-1|ABB92462.1| 359|Homo sapiens rcPOU5F1 protein. 28 4.6
AF268618-1|AAG53085.1| 359|Homo sapiens POU 5 domain protein pr... 28 4.6
AF268615-1|AAG53083.1| 359|Homo sapiens POU 5 domain protein pr... 28 4.6
Z11899-1|CAA77952.1| 265|Homo sapiens octamer binding protein 3... 28 6.1
BX088580-2|CAI18708.1| 265|Homo sapiens POU domain class 5 tran... 28 6.1
BA000025-59|BAB63311.1| 265|Homo sapiens POU-type homeodomain-c... 28 6.1
AL773544-8|CAI18485.1| 265|Homo sapiens POU domain, class 5, tr... 28 6.1
AL662833-11|CAI17407.1| 265|Homo sapiens POU domain, class 5, t... 28 6.1
AB088113-2|BAC54946.1| 265|Homo sapiens POU domain, class 5, tr... 28 6.1
>Z11901-1|CAA77953.1| 359|Homo sapiens octamer binding protein
3_like sequence protein.
Length = 359
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +3
Query: 93 DDDALQPLQEVGDEQLREKRKLEGITQAKFGVKNAVLGFVFGKINS 230
D ALQ E + L++KR G TQA G+ +LG +FGK+ S
Sbjct: 138 DIKALQKELEQFAKLLKQKRITLGYTQADVGL---ILGVLFGKVFS 180
>DQ486513-1|ABF29403.1| 359|Homo sapiens POU domain transcription
factor Oct-4 protein.
Length = 359
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +3
Query: 93 DDDALQPLQEVGDEQLREKRKLEGITQAKFGVKNAVLGFVFGKINS 230
D ALQ E + L++KR G TQA G+ +LG +FGK+ S
Sbjct: 138 DIKALQKELEQFAKLLKQKRITLGYTQADVGL---ILGVLFGKVFS 180
>DQ120688-1|ABB92462.1| 359|Homo sapiens rcPOU5F1 protein.
Length = 359
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +3
Query: 93 DDDALQPLQEVGDEQLREKRKLEGITQAKFGVKNAVLGFVFGKINS 230
D ALQ E + L++KR G TQA G+ +LG +FGK+ S
Sbjct: 138 DIKALQKELEQFAKLLKQKRITLGYTQADVGL---ILGVLFGKVFS 180
>AF268618-1|AAG53085.1| 359|Homo sapiens POU 5 domain protein
protein.
Length = 359
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +3
Query: 93 DDDALQPLQEVGDEQLREKRKLEGITQAKFGVKNAVLGFVFGKINS 230
D ALQ E + L++KR G TQA G+ +LG +FGK+ S
Sbjct: 138 DIKALQKELEQFAKLLKQKRITLGYTQADVGL---ILGVLFGKVFS 180
>AF268615-1|AAG53083.1| 359|Homo sapiens POU 5 domain protein
protein.
Length = 359
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +3
Query: 93 DDDALQPLQEVGDEQLREKRKLEGITQAKFGVKNAVLGFVFGKINS 230
D ALQ E + L++KR G TQA G+ +LG +FGK+ S
Sbjct: 138 DIKALQKELEQFAKLLKQKRITLGYTQADVGL---ILGVLFGKVFS 180
>Z11899-1|CAA77952.1| 265|Homo sapiens octamer binding protein 3B
protein.
Length = 265
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 84 QLADDDALQPLQEVGDEQLREKRKLEGITQAKFGVKNAVLGFVFGKINS 230
Q D ALQ E + L++KR G TQA G+ LG +FGK+ S
Sbjct: 40 QSQDIKALQKELEQFAKLLKQKRITLGYTQADVGL---TLGVLFGKVFS 85
>BX088580-2|CAI18708.1| 265|Homo sapiens POU domain class 5
transcription factor 1 protein.
Length = 265
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 84 QLADDDALQPLQEVGDEQLREKRKLEGITQAKFGVKNAVLGFVFGKINS 230
Q D ALQ E + L++KR G TQA G+ LG +FGK+ S
Sbjct: 40 QSQDIKALQKELEQFAKLLKQKRITLGYTQADVGL---TLGVLFGKVFS 85
>BA000025-59|BAB63311.1| 265|Homo sapiens POU-type
homeodomain-containing DNA-binding protein protein.
Length = 265
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 84 QLADDDALQPLQEVGDEQLREKRKLEGITQAKFGVKNAVLGFVFGKINS 230
Q D ALQ E + L++KR G TQA G+ LG +FGK+ S
Sbjct: 40 QSQDIKALQKELEQFAKLLKQKRITLGYTQADVGL---TLGVLFGKVFS 85
>AL773544-8|CAI18485.1| 265|Homo sapiens POU domain, class 5,
transcription factor 1 protein.
Length = 265
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 84 QLADDDALQPLQEVGDEQLREKRKLEGITQAKFGVKNAVLGFVFGKINS 230
Q D ALQ E + L++KR G TQA G+ LG +FGK+ S
Sbjct: 40 QSQDIKALQKELEQFAKLLKQKRITLGYTQADVGL---TLGVLFGKVFS 85
>AL662833-11|CAI17407.1| 265|Homo sapiens POU domain, class 5,
transcription factor 1 protein.
Length = 265
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 84 QLADDDALQPLQEVGDEQLREKRKLEGITQAKFGVKNAVLGFVFGKINS 230
Q D ALQ E + L++KR G TQA G+ LG +FGK+ S
Sbjct: 40 QSQDIKALQKELEQFAKLLKQKRITLGYTQADVGL---TLGVLFGKVFS 85
>AB088113-2|BAC54946.1| 265|Homo sapiens POU domain, class 5,
transcription factor 1 protein.
Length = 265
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 84 QLADDDALQPLQEVGDEQLREKRKLEGITQAKFGVKNAVLGFVFGKINS 230
Q D ALQ E + L++KR G TQA G+ LG +FGK+ S
Sbjct: 40 QSQDIKALQKELEQFAKLLKQKRITLGYTQADVGL---TLGVLFGKVFS 85
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,741,503
Number of Sequences: 237096
Number of extensions: 261419
Number of successful extensions: 1175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1342408202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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