Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4685
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61945-2|AAB03125.2|  494|Caenorhabditis elegans Hypothetical pr...    28   1.1  
AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine re...    28   1.5  
Z79759-7|CAE18047.1|  239|Caenorhabditis elegans Hypothetical pr...    27   2.6  
AL023830-1|CAA19472.1|  449|Caenorhabditis elegans Hypothetical ...    27   3.4  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    26   4.5  
Z68104-5|CAA92114.2|  102|Caenorhabditis elegans Hypothetical pr...    26   6.0  
AF303263-1|AAG50221.1|  102|Caenorhabditis elegans XM26 protein.       26   6.0  
AC084155-2|AAG23363.2|  167|Caenorhabditis elegans Hypothetical ...    26   6.0  
AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical ...    25   7.9  

>U61945-2|AAB03125.2|  494|Caenorhabditis elegans Hypothetical
           protein C49C8.4 protein.
          Length = 494

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +3

Query: 114 LQEVGDEQLREKRKLEGITQAKFGV-KNAVLGFVFGKINSLIDAKTKFVANLDRQNI 281
           ++  GD  ++++R    I +  FG+ KN +   V G++ ++ID+  K + ++D QNI
Sbjct: 112 IESHGDRWIQQRRFALHILR-DFGLGKNLMEEKVLGEVTAMIDSIRKSMEDVDMQNI 167


>AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine
           receptor, class x protein104 protein.
          Length = 279

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 292 LLSSMFCRSRFATNLVFASINELIF 218
           +L+SM+CRS   TNL+   ++ +++
Sbjct: 238 ILASMYCRSHVCTNLITMGLDVVVY 262


>Z79759-7|CAE18047.1|  239|Caenorhabditis elegans Hypothetical
           protein ZK858.8 protein.
          Length = 239

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +2

Query: 185 RQERSARVRLRENQLVDRRED*VR--SEPGPAEHRAQQAVRH 304
           RQ ++ + ++R+NQ+VDR     R  + P P ++R     RH
Sbjct: 26  RQFQAVQPQIRQNQVVDRNIQPPRRHNAPAPNQNRRNHQQRH 67


>AL023830-1|CAA19472.1|  449|Caenorhabditis elegans Hypothetical
           protein Y26E6A.1 protein.
          Length = 449

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +2

Query: 152 QARGHHSGKVRRQERSARVRLRENQLV--DRRED*VRSEPGPAEHRAQ 289
           QAR H+     R+ R    R R N+ +  DR     R   GPA  RAQ
Sbjct: 26  QARNHNLRNHARRHREMFERARANRRLQADRGAQAARERGGPAAGRAQ 73


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 171  QAKFGVKNAVLGFVFGKINSLIDAKTKFVANLDRQNIEL 287
            ++ F ++NA++    G +NS ++ K   VA  DR +++L
Sbjct: 2341 RSHFTIRNALIVSNSGIVNSKMEGKPHRVAKKDRYHVKL 2379


>Z68104-5|CAA92114.2|  102|Caenorhabditis elegans Hypothetical
           protein F08B12.4 protein.
          Length = 102

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 117 QEVGDEQLREKRKLEGITQAKFGVKN 194
           QE+ ++ L EK  LEG TQ K  +KN
Sbjct: 64  QELTNKNLEEKSVLEGGTQVKPWLKN 89


>AF303263-1|AAG50221.1|  102|Caenorhabditis elegans XM26 protein.
          Length = 102

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 117 QEVGDEQLREKRKLEGITQAKFGVKN 194
           QE+ ++ L EK  LEG TQ K  +KN
Sbjct: 64  QELTNKNLEEKSVLEGGTQVKPWLKN 89


>AC084155-2|AAG23363.2|  167|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.5 protein.
          Length = 167

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 78  RRQLADDDALQPLQEVGDE--QLREKRKLEGITQAKFGVKNAVLGFVFGKINSLIDAKTK 251
           R ++  ++  Q  +E  D+  +L  K+K +     KF VKN    F+FG   S    + K
Sbjct: 93  RERVGQEEETQRFRECYDKLHELSHKKKKKKNGTGKFSVKN----FIFGCFGSTAVGEAK 148

Query: 252 FVANLDRQNIELNKQ 296
              N +  + E  KQ
Sbjct: 149 -TGNGEEDDYERKKQ 162


>AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical
           protein T11F1.8 protein.
          Length = 888

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 75  SRRQLADDDALQPLQEVGDEQLREKRKLEGITQAKFGVKNAVL 203
           SR  + D   LQ L++V  +  + KR++    +  +G+K  VL
Sbjct: 233 SRNDIEDLSFLQGLRQVASQNGKGKRRVTMDIRENYGMKRLVL 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,914,711
Number of Sequences: 27780
Number of extensions: 48892
Number of successful extensions: 253
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)