Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4685
         (305 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   6.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    20   7.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    20   7.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   7.9  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 259 ATNLVFASINELIFPKTNPSTAFL 188
           A  L+    + L++P+ NPS  +L
Sbjct: 27  AEELIHIPEHWLVYPEPNPSLHYL 50


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 47  QHECAERGERACGHH 3
           +H C+  G+RA G H
Sbjct: 107 KHLCSICGDRASGKH 121


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 47  QHECAERGERACGHH 3
           +H C+  G+RA G H
Sbjct: 107 KHLCSICGDRASGKH 121


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 50  QQHECAERGERACGHH 3
           Q+  C   G+RA G+H
Sbjct: 183 QEELCLVCGDRASGYH 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,283
Number of Sequences: 438
Number of extensions: 647
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)