Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4684
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    27   2.4  
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo...    26   5.5  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    26   5.5  
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    26   7.2  

>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 604 VVKAILTSFQFNSLGVTTG 660
           V KA LT FQFN++GV+ G
Sbjct: 99  VKKAGLTGFQFNTIGVSDG 117


>SPBC19F8.02 |||nuclear distribution protein NUDC
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 113 KEAVLLVIHLMETSGVSWWSKII 181
           +E   LVIHL +++ + WWS +I
Sbjct: 75  EEQERLVIHLEKSNKMEWWSCVI 97


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 759 FNLWALFNSKMLVYSLVFFLIVNSDAVVRNETCP 658
           F+LWAL + ++    + + LI N+  + R + CP
Sbjct: 315 FSLWALSDLELTNPDMEYKLIDNNQGIHRMQPCP 348


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 249 VKKIAFKYTTCLA*VVTAHGHHNGNFAITMLQEVD 353
           V+++A KY   +A + TA   H G++ I  + +V+
Sbjct: 283 VEELAKKYNVSMATLATAWSLHKGDYPIVGISKVE 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,066
Number of Sequences: 5004
Number of extensions: 67986
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)