Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4682
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    29   0.63 
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   5.9  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    25   7.7  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    25   7.7  

>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 386 AISKIRSTIF*NVYFFYLCHVC 321
           A+  I S IF N +FFYLC  C
Sbjct: 27  ALVIILSVIFINFFFFYLCRCC 48


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 412 MNISPSTAGPSAKFDPLSFKMYIFFIYVMYAER 314
           + +SPS   P  +F P S +M +   Y + A+R
Sbjct: 24  IEVSPSMLDPVDEFTPSSLQMALICAYQLAAQR 56


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 236 VNKLFCLFHSVGEVILLAGKDSKSRD 159
           ++KL  L  SVG VI++  +D+K  D
Sbjct: 157 LSKLLALMASVGGVIIVVTQDAKQAD 182


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 333 MSCMQRDARVRSDIKGYHF*F 271
           +SC+  DA++ S   GYHF F
Sbjct: 29  VSCITMDAKITSLQPGYHFLF 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,897,019
Number of Sequences: 5004
Number of extensions: 34599
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)