Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4682
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   6.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   8.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 354 LKDSGSNFADGPAVLG-EIFINN 419
           ++ SG N  DGPAV+   IF+ +
Sbjct: 47  IRPSGENATDGPAVVRVNIFVRS 69


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 276 RNGNLLYHYVHVHLSAY 326
           RNG L+Y+ +  H++AY
Sbjct: 752 RNGALIYNILPPHVAAY 768


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 354 LKDSGSNFADGPAVL 398
           ++ SG N  DGPA++
Sbjct: 47  IRPSGENATDGPAIV 61


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 339 LFMSCMQRDARVRSDIKGYHF 277
           + +S + R+ RVRSD+K   F
Sbjct: 500 IVLSTILRNFRVRSDVKESEF 520


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +2

Query: 131 VKAEHCMAFSHGFYCLFLL 187
           ++  HCM  +   + LF+L
Sbjct: 74  IRESHCMTITFASFLLFIL 92


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 372 SIHYLLKCIFFLF 334
           S+HYLL  ++ LF
Sbjct: 46  SLHYLLALLYILF 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,652
Number of Sequences: 438
Number of extensions: 2688
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)