Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4681
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    26   2.5  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    26   2.5  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   4.5  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    25   4.5  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   5.9  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   5.9  
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    25   5.9  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    25   5.9  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   7.8  

>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 151 SGLVGQNTEPTNPFLPNSRFQCTSALHARGGVSSSLDISPEREVTI 288
           +G    +  P+   LP+   +  + L A G   SS+D+S E + ++
Sbjct: 470 TGYGSMSQSPSRSDLPSKISRVNAELQAHGSQRSSIDVSKENKSSV 515


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 147 MLGTRWTEHRANESIFTELKIPMHLSTTCARRSFEF 254
           M+G     +R+ E +   LK+ M LS  CA+ S  F
Sbjct: 383 MIGLPRQPNRSYEIMLQHLKVSMELSNPCAKTSSIF 418


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 90  CKHLNNVPYVFLYLMC 137
           C  LNN  Y FL+L+C
Sbjct: 194 CVGLNNARYFFLFLLC 209


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 31  LIELRSFEEIFTLYIRPVICANILIMYLMSF 123
           +IEL   E++ +L+   +IC ++ I YLM F
Sbjct: 352 IIELH-MEKVKSLHSLSIICLDMAISYLMEF 381


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 271 LAICPKNSKLLRAHVVLRCIGILSSVKMDSL 179
           +++CPKNS ++R H +L  + +      DSL
Sbjct: 729 ISLCPKNSSIIR-HALLAKLVLFPENTADSL 758


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 125  LFNVLEENARDSLDRTQS--QRIHFYRTQDSNAPQHYMRAEEFRVLWTYRQKER*QSGKA 298
            +F  L E  R+  + ++   +++  Y+   S A Q   + E+F    T +QKE  Q+ K 
Sbjct: 1110 VFKTLVEKEREWRENSEEWKEKMREYKKWQSTANQRAKQMEKFEKSATEKQKE--QALKE 1167

Query: 299  AGN 307
            AG+
Sbjct: 1168 AGD 1170


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 146 NARDSLDRTQSQRIHFYRTQDSNAPQHYMRAEEFRVLWTYRQKER*QSGKAAGNR 310
           N R   +R + Q I     Q  N  + + RAE F   +  R++ER +  ++A N+
Sbjct: 25  NERTRKERVE-QAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNK 78


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 183 ESIFTELKIPMHLSTTCARRSFEFFGHIARKRG 281
           E +F   ++P  L+T+    + +F  +IARKRG
Sbjct: 377 ERMFQRYELPPLLNTSDIDTATDFLVNIARKRG 409


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 296 LFQIVTSLSGDMSKELETPPRACSAEVHWNLEF 198
           L+ I   +  D+    ETP R+ S +V+W + F
Sbjct: 499 LYNISRGIDTDIINN-ETPRRSISVDVNWGVRF 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,869
Number of Sequences: 5004
Number of extensions: 47707
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)