Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4681
(475 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250... 31 0.47
09_02_0489 - 9847903-9848081,9848916-9849107,9849195-9849276,984... 31 0.63
11_04_0212 - 14919074-14919433,14919444-14920514 29 1.9
06_01_0251 - 1890143-1891180 28 3.3
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22... 28 3.3
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965... 28 3.3
09_01_0094 - 1367748-1367755,1368134-1368401 27 5.8
07_03_1348 + 25945444-25945551,25946411-25946607,25946732-259468... 27 7.7
02_04_0632 + 24614659-24615528,24615636-24616133 27 7.7
02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619 27 7.7
01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965 27 7.7
>06_03_1208 -
28422941-28423139,28423854-28424434,28424705-28425078,
28425235-28425339,28425902-28425970,28426084-28426156,
28426395-28426478,28426616-28426648,28426731-28426790,
28427535-28427627,28427851-28427970,28428804-28428886,
28428887-28429007,28429114-28429164,28429245-28429333,
28429429-28429561,28430220-28430354,28430581-28430952,
28431679-28431796,28431883-28431998,28432131-28432442
Length = 1106
Score = 31.1 bits (67), Expect = 0.47
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +2
Query: 155 DSLDRT---QSQRIHFYRTQDSNAPQHYMRAEEFRVLWTYRQKER*QSGKAAGNRQGMRE 325
DSLDR S R H T D N ++Y + + T+R + R + G++
Sbjct: 278 DSLDRNATKSSSRTHSTLT-DPNFVENYFKYSRLHFIGTWRNRYRKRFSNLLGDKSSKGN 336
Query: 326 NAHRQKSNSLV 358
H K+N+++
Sbjct: 337 RDHSGKNNTII 347
>09_02_0489 -
9847903-9848081,9848916-9849107,9849195-9849276,
9849529-9849722,9851009-9851601,9851827-9851870
Length = 427
Score = 30.7 bits (66), Expect = 0.63
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -3
Query: 344 ISACGHSPAYLACYQQLFQIVTSLSGDMSKELETPPRACSAEVHW 210
++AC + YL C + ++ + L ++ E++TP C+ HW
Sbjct: 239 VAACADTEDYLKCARMIYNKASRLLDAINSEMDTPLH-CAGWEHW 282
>11_04_0212 - 14919074-14919433,14919444-14920514
Length = 476
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +3
Query: 228 TCARRSFEFFGHIARKRGDNLEKLLVTGKVCGRMPTGRNPIRWSDQIRSTLNTSVHVAIH 407
TCA + +IA + G + +LVTG + P G RW+ + S + SV A
Sbjct: 239 TCAEMEGPYIDYIAAEHG---KPVLVTGPIVPEPPRGELEERWATWLSSFPDNSVVFASF 295
Query: 408 TAE 416
+E
Sbjct: 296 GSE 298
>06_01_0251 - 1890143-1891180
Length = 345
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Frame = -1
Query: 436 EKKPWLSSAVWIATWTEVLRVERIWSDQRIG----FLP-VGILPHTLPVTSSFSRLS 281
+K+ W++S W+ TW +W+ G LP G T P SF LS
Sbjct: 51 DKRSWVTSHGWVLTWDPTTLATFLWNPHAAGRRRIVLPSFGQTTTTPPPADSFCALS 107
>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
225296-225356,225666-226918
Length = 1891
Score = 28.3 bits (60), Expect = 3.3
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 141 RKMLGTRWTEHRANESIFTELKIPMHLSTTCARRSFEFFGHIARKRG-DNLEKLLVT-GK 314
+K LG+ + A +EL++P LS + G A+ NL+ L V+ +
Sbjct: 1798 KKELGSVYLSRNALSFDMSELRLPERLSFLDVSHNAIRGGIPAQVANLSNLQLLNVSYNR 1857
Query: 315 VCGRMPTGRNPIRW 356
+CG +PTG N R+
Sbjct: 1858 MCGEVPTGGNMARF 1871
>03_02_0584 -
9650996-9651488,9651630-9652049,9652129-9652158,
9652201-9652287,9652657-9653669,9653832-9654854,
9654946-9654969
Length = 1029
Score = 28.3 bits (60), Expect = 3.3
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -1
Query: 433 KKPWLSSAVWIATWTEVLRVER 368
K+ W+SS++W TW +++ +R
Sbjct: 717 KRDWVSSSIWNETWERLMQSKR 738
>09_01_0094 - 1367748-1367755,1368134-1368401
Length = 91
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 371 LDSQYLSPRCYPHSRGQPGFFFLPMLIALRGY 466
L Q L P PH G FL +L++LRG+
Sbjct: 11 LHHQLLHPLALPHVAGNEVLEFLQVLLSLRGH 42
>07_03_1348 +
25945444-25945551,25946411-25946607,25946732-25946804,
25947003-25947092,25947410-25947465,25947559-25947738,
25947813-25948006,25948095-25948234,25948324-25948466,
25948549-25948697,25948784-25949148,25949264-25949368
Length = 599
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 141 RKMLGTRWTEHRANESIFTELKIPMHLSTTCARRS 245
+K+LG +WTE S T+ + ST C RR+
Sbjct: 158 QKVLGNKWTEIAKVVSGRTDNAVKNRFSTLCKRRA 192
>02_04_0632 + 24614659-24615528,24615636-24616133
Length = 455
Score = 27.1 bits (57), Expect = 7.7
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = -1
Query: 409 VWIATWTEVLRVERIWSDQRIGFLPVGI--LPHTLPVTSS-FSRLSPLFLAICPKN-SKL 242
V + +TE+ V SD +LPVG+ LP V S + L+ +C ++ + +
Sbjct: 160 VTVDVYTEMYNVRDGISDGPRDYLPVGLRPLPTIYTVVSEVYFAFLALWACVCVRHRATV 219
Query: 241 LRAHVVLRCIGILSSVKM 188
R H V+ + + ++KM
Sbjct: 220 ERIHAVMGALLLFKALKM 237
>02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619
Length = 398
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +2
Query: 137 LEE--NARDSLDRTQSQRIHFYRTQDSN 214
LEE N SLDRT ++R+ FY + DS+
Sbjct: 248 LEERLNFFTSLDRTLNERLDFYESSDSS 275
>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
Length = 675
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 297 LLVTGKVCGRMPTGRNPIRWSDQIRSTLNTSVHVA-IHTAEDSQ 425
+L+ ++ G+ R P+ W ++R L + +A IHT + +
Sbjct: 451 MLIENELIGKRGEDRTPLNWETRVRIALGAARGIAHIHTENNGK 494
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,666,847
Number of Sequences: 37544
Number of extensions: 304870
Number of successful extensions: 928
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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