Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4681
(475 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 38 0.003
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 38 0.003
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 38 0.003
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 38 0.003
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 34 0.045
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 34 0.060
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 34 0.060
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ... 29 1.3
Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z81495-11|CAN99657.1| 339|Caenorhabditis elegans Hypothetical p... 28 3.0
Z81495-10|CAD57692.1| 480|Caenorhabditis elegans Hypothetical p... 28 3.0
Z81495-9|CAB04064.1| 389|Caenorhabditis elegans Hypothetical pr... 28 3.0
AL032644-11|CAN99705.1| 339|Caenorhabditis elegans Hypothetical... 28 3.0
AL032644-10|CAD57710.1| 480|Caenorhabditis elegans Hypothetical... 28 3.0
AL032644-9|CAA21673.1| 389|Caenorhabditis elegans Hypothetical ... 28 3.0
AC084268-3|AAK19005.5| 397|Caenorhabditis elegans Hypothetical ... 28 3.9
Z29094-8|CAA82337.1| 254|Caenorhabditis elegans Hypothetical pr... 27 5.2
U50191-10|AAK31550.2| 1146|Caenorhabditis elegans Hypothetical p... 27 6.9
AF067623-4|AAC17556.2| 393|Caenorhabditis elegans Hypothetical ... 27 6.9
AC006810-8|AAK84621.1| 364|Caenorhabditis elegans Hypothetical ... 27 6.9
U80025-2|AAD32270.3| 806|Caenorhabditis elegans Hypothetical pr... 27 9.1
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 237 RRSFEFFGHIARKRGDNLEKLLVTGKVCG-RMPTGRNPIRWSDQIRSTLNT 386
+R + GH+AR++ L+ + G + P GR P+RW+D +R + T
Sbjct: 809 KRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITT 859
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 237 RRSFEFFGHIARKRGDNLEKLLVTGKVCG-RMPTGRNPIRWSDQIRSTLNT 386
+R + GH+AR++ L+ + G + P GR P+RW+D +R + T
Sbjct: 984 KRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITT 1034
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 237 RRSFEFFGHIARKRGDNLEKLLVTGKVCG-RMPTGRNPIRWSDQIRSTLNT 386
+R + GH+AR++ L+ + G + P GR P+RW+D +R + T
Sbjct: 723 KRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITT 773
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 237 RRSFEFFGHIARKRGDNLEKLLVTGKVCG-RMPTGRNPIRWSDQIRSTLNT 386
+R + GH+AR++ L+ + G + P GR P+RW+D +R + T
Sbjct: 335 KRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITT 385
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 34.3 bits (75), Expect = 0.045
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Frame = +3
Query: 141 RKMLGTRWTEHRANESIFTELKIPMHLSTTCA---RRSFEFFGHIARKRGDNLEKLLVTG 311
RK++G TE R E++ L +R + GH+AR+ L+
Sbjct: 85 RKLVGLTLTEQRERNIHREEVREKSKLRDPLIHIKKRKLGWAGHVARRTDGRWTTLM--N 142
Query: 312 KVCGR---MPTGRNPIRWSDQIRSTLNT 386
C R P GR P+RW+D +R + T
Sbjct: 143 DWCPRDEKRPVGRPPMRWNDSLRKEVTT 170
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 33.9 bits (74), Expect = 0.060
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +2
Query: 134 VLEENARDSLDRTQSQRIHFYRTQDSNAPQHYMRAEEFRVLWTYRQKER*QSGK-AAGNR 310
+++ + Q+Q++H + PQ M+ + ++Q ++ Q+G+ +
Sbjct: 94 MMQPQQMQQAQQQQAQQMHQMQIHHQQHPQ-MMQQHAQQGYHPHQQNQQHQAGQHQQSHH 152
Query: 311 QGMRENAHRQKSNSLVGPNTLDSQYLSPRC 400
Q N HR + S GP+ + + PRC
Sbjct: 153 QSQNHNQHRNHNQSHSGPHHIPQNLMMPRC 182
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 33.9 bits (74), Expect = 0.060
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +2
Query: 134 VLEENARDSLDRTQSQRIHFYRTQDSNAPQHYMRAEEFRVLWTYRQKER*QSGK-AAGNR 310
+++ + Q+Q++H + PQ M+ + ++Q ++ Q+G+ +
Sbjct: 218 MMQPQQMQQAQQQQAQQMHQMQIHHQQHPQ-MMQQHAQQGYHPHQQNQQHQAGQHQQSHH 276
Query: 311 QGMRENAHRQKSNSLVGPNTLDSQYLSPRC 400
Q N HR + S GP+ + + PRC
Sbjct: 277 QSQNHNQHRNHNQSHSGPHHIPQNLMMPRC 306
>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
protein F07G11.9 protein.
Length = 2025
Score = 29.5 bits (63), Expect = 1.3
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 8/88 (9%)
Frame = -1
Query: 427 PWLSSAVWIATWTEVLRVERIW--------SDQRIGFLPVGILPHTLPVTSSFSRLSPLF 272
PW+SS + WTE+ + W S +R+ L G+ LP+ S
Sbjct: 11 PWVSSKAYCTKWTEIKSGDSCWNIASNAKISVERLQQLNKGMKCDKLPLGDKLCLASSTT 70
Query: 271 LAICPKNSKLLRAHVVLRCIGILSSVKM 188
+C K KL C I SS K+
Sbjct: 71 KPVCEKKLKLKAEDT---CFKIWSSQKL 95
>Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical
protein T01E8.5 protein.
Length = 1270
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -3
Query: 362 VRPANWISACGHSPAYLACYQQLFQIVTSLSGDMSKELET--PPRACSAEVHWNLEFGKN 189
+R W+ +C H+P LA Q F+ L+ D+ K T R E W +
Sbjct: 514 IRYLKWMISCAHTPVVLANIQATFEYNFGLA-DVEKRTSTNSKEREVRLEEFWESGLPRI 572
Query: 188 GFVGSV 171
G G+V
Sbjct: 573 GDEGAV 578
>Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical
protein T01E8.5 protein.
Length = 1270
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -3
Query: 362 VRPANWISACGHSPAYLACYQQLFQIVTSLSGDMSKELET--PPRACSAEVHWNLEFGKN 189
+R W+ +C H+P LA Q F+ L+ D+ K T R E W +
Sbjct: 514 IRYLKWMISCAHTPVVLANIQATFEYNFGLA-DVEKRTSTNSKEREVRLEEFWESGLPRI 572
Query: 188 GFVGSV 171
G G+V
Sbjct: 573 GDEGAV 578
>Z81495-11|CAN99657.1| 339|Caenorhabditis elegans Hypothetical
protein Y51H1A.1c protein.
Length = 339
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 298 CW*QARYAGECPQAEIQFAGRTKYARLSIPQSTLLSTQP 414
CW R +G+CP+ + T+ A++ P +TLL QP
Sbjct: 304 CW---RTSGDCPKCVRRQNFETRRAQVDDPHNTLLVLQP 339
>Z81495-10|CAD57692.1| 480|Caenorhabditis elegans Hypothetical
protein Y51H1A.1b protein.
Length = 480
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 298 CW*QARYAGECPQAEIQFAGRTKYARLSIPQSTLLSTQP 414
CW R +G+CP+ + T+ A++ P +TLL QP
Sbjct: 445 CW---RTSGDCPKCVRRQNFETRRAQVDDPHNTLLVLQP 480
>Z81495-9|CAB04064.1| 389|Caenorhabditis elegans Hypothetical
protein Y51H1A.1a protein.
Length = 389
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 298 CW*QARYAGECPQAEIQFAGRTKYARLSIPQSTLLSTQP 414
CW R +G+CP+ + T+ A++ P +TLL QP
Sbjct: 354 CW---RTSGDCPKCVRRQNFETRRAQVDDPHNTLLVLQP 389
>AL032644-11|CAN99705.1| 339|Caenorhabditis elegans Hypothetical
protein Y51H1A.1c protein.
Length = 339
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 298 CW*QARYAGECPQAEIQFAGRTKYARLSIPQSTLLSTQP 414
CW R +G+CP+ + T+ A++ P +TLL QP
Sbjct: 304 CW---RTSGDCPKCVRRQNFETRRAQVDDPHNTLLVLQP 339
>AL032644-10|CAD57710.1| 480|Caenorhabditis elegans Hypothetical
protein Y51H1A.1b protein.
Length = 480
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 298 CW*QARYAGECPQAEIQFAGRTKYARLSIPQSTLLSTQP 414
CW R +G+CP+ + T+ A++ P +TLL QP
Sbjct: 445 CW---RTSGDCPKCVRRQNFETRRAQVDDPHNTLLVLQP 480
>AL032644-9|CAA21673.1| 389|Caenorhabditis elegans Hypothetical
protein Y51H1A.1a protein.
Length = 389
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 298 CW*QARYAGECPQAEIQFAGRTKYARLSIPQSTLLSTQP 414
CW R +G+CP+ + T+ A++ P +TLL QP
Sbjct: 354 CW---RTSGDCPKCVRRQNFETRRAQVDDPHNTLLVLQP 389
>AC084268-3|AAK19005.5| 397|Caenorhabditis elegans Hypothetical
protein Y92H12BL.4 protein.
Length = 397
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 50 LKKYLLCIFDL*FVQTS**CTLCLSLFNVLEENARDSLDRTQSQRIHFYR 199
L K+L IFDL V TS C+ + + + SL Q +IH +R
Sbjct: 162 LNKHLDPIFDLPEVSTSYFSQQCIKRLSKVIARLKPSLSTIQETKIHIFR 211
>Z29094-8|CAA82337.1| 254|Caenorhabditis elegans Hypothetical
protein C07A9.10 protein.
Length = 254
Score = 27.5 bits (58), Expect = 5.2
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 324 RMPTGRNPIRWSDQIRSTLNT 386
+ P G+ P+RW+D +R + T
Sbjct: 14 KRPVGKPPMRWTDSLRKEITT 34
>U50191-10|AAK31550.2| 1146|Caenorhabditis elegans Hypothetical
protein T14B4.1 protein.
Length = 1146
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 110 TLCLSLFNVLEENARDSLDRTQSQRIHFYRTQDSN 214
T+CL+ FN L EN + +R ++ I FY+ N
Sbjct: 485 TVCLTFFNALVENVPE--ERYETLAIEFYKYLGGN 517
>AF067623-4|AAC17556.2| 393|Caenorhabditis elegans Hypothetical
protein T26C12.3 protein.
Length = 393
Score = 27.1 bits (57), Expect = 6.9
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -3
Query: 335 CGHSPAYLACYQQLFQIVTSLSGDMSKELETPPRACSAEVHWNLEFGKNGFV 180
CGHS + C Q LF +L+ +++ + P S V L G NG V
Sbjct: 125 CGHSLCLICCNQLLFSSPPALTSHLNRPI--PRMGISQRVPSTLP-GSNGIV 173
>AC006810-8|AAK84621.1| 364|Caenorhabditis elegans Hypothetical
protein Y5H2B.1 protein.
Length = 364
Score = 27.1 bits (57), Expect = 6.9
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 57 NIYSVYSTCDLCKHLNNVPYVFLYLMC*RKML-GTRWTEHRANESI-FTELKIPMHLSTT 230
NI+ + S L KHLN P F+ +KML R T R E +P +S T
Sbjct: 79 NIFEIASLYGLSKHLNRTPLFFIENGYHKKMLDNLRKTMPRLMEKFRILNGSVPRSISET 138
Query: 231 CARRS 245
+R+
Sbjct: 139 KFQRA 143
>U80025-2|AAD32270.3| 806|Caenorhabditis elegans Hypothetical
protein F02C9.2 protein.
Length = 806
Score = 26.6 bits (56), Expect = 9.1
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = -3
Query: 170 FCPTSPEHFPLAH*IKKDIRYIIKMFAQITGRI--YRVNISSKERNSIKSNLVTLA 9
F PT+ HF AH KD + +++ + +GRI + N + K +SI+S +V LA
Sbjct: 323 FVPTNAVHFRNAHNYLKDFKDEQQVY-EDSGRIIEFLHNWNCKTGSSIQSCIVQLA 377
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,772,490
Number of Sequences: 27780
Number of extensions: 262889
Number of successful extensions: 709
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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