Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4674
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0214 + 13141213-13143741                                         32   0.30 
02_01_0549 - 4038699-4038753,4039225-4039514,4039673-4039970,404...    27   8.5  

>06_02_0214 + 13141213-13143741
          Length = 842

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 20/61 (32%), Positives = 34/61 (55%)
 Frame = +1

Query: 286 GTSGLKIPDSTDNVAAKLRREVSLNCIYSITVEMDIDLPVSTYLQKN*IRNYFCDIDTNA 465
           G++ L  PD   + A +L    + N ++++T + D+D   S YL    IR +FCDI + A
Sbjct: 266 GSTPLIAPDIVYSTATELAASNTTNALFNMTWQFDVDSGFS-YL----IRFHFCDIVSKA 320

Query: 466 M 468
           +
Sbjct: 321 L 321


>02_01_0549 -
           4038699-4038753,4039225-4039514,4039673-4039970,
           4040779-4040849,4040966-4041079,4041166-4041240,
           4041347-4041405,4041870-4041912
          Length = 334

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 310 DSTDNVAAKLRREVSLNCIYSITVEMDIDLPVSTYLQ 420
           ++TD +A      +S NC  ++ V  D+D P+  Y Q
Sbjct: 75  NTTDKLAYIQNPTISKNCRRTLKVPKDMDAPIFVYYQ 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,387,952
Number of Sequences: 37544
Number of extensions: 314207
Number of successful extensions: 506
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)