Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4673
(742 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 37 0.003
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 33 0.043
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 31 0.23
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 30 0.30
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 30 0.30
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 30 0.30
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.30
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 30 0.40
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 29 0.70
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 29 0.92
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 29 0.92
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 27 2.8
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 27 2.8
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 27 3.7
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 4.9
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 4.9
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 4.9
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 4.9
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 4.9
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 4.9
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 4.9
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 4.9
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 4.9
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 4.9
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 4.9
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 26 6.5
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 8.6
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 8.6
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 25 8.6
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 25 8.6
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 36.7 bits (81), Expect = 0.003
Identities = 40/185 (21%), Positives = 91/185 (49%), Gaps = 9/185 (4%)
Frame = +2
Query: 212 QNYVKYVLENDRQLQGYK----DLMPRRNDRLEMPPMKFRYPKSLRVNKNDNKPNLKQIK 379
Q+ KYV E+ +L+ ++ D+ ++ ++ + + S++ + + + +++ +
Sbjct: 998 QSLNKYVDEHKSRLREFENALWDINSSIDELVKFIEFESKQMNSVKAERIELENQIQEQR 1057
Query: 380 TNLNMIMNNKDKYVNENSDVK----GMFAFQSEHDSQKPQYTSLVSPKQNPLGNKD-SQS 544
T L+ + NN++KY+ S++K F Q+ DS P+Y+ ++ L + D S+
Sbjct: 1058 TALSEVGNNENKYLKLMSNLKLHNLTEFCDQTTMDSTFPEYS------EDELSSVDKSEL 1111
Query: 545 ESQIVVLTNDSDFGEIDFDDLITTNPFQAMEEKNTKNYADNNSDPVKITGQSMNVLKTKE 724
S I VL ++ E+D + L + ++ ++ K +D S+ K T V +
Sbjct: 1112 VSNISVLKKKTEDREVDINVL---SEYRRCNKEAEKRDSDYQSELQKRTDLKKVVTDLQS 1168
Query: 725 KKIDE 739
+++DE
Sbjct: 1169 QRLDE 1173
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 33.1 bits (72), Expect = 0.043
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Frame = +2
Query: 203 NIAQNYVKYVLENDRQLQGYKDLMPRRNDRLEMPPMKFRYPKSLRVNKNDNKPNLKQIKT 382
++ + +K +++ ++QG +DL+ +R L+ K +SL V+ ND K L T
Sbjct: 166 DLLSSNMKTLMKEKTKVQGQRDLLEQR---LQGLMKKLTEVESLTVSLNDEKNKLTLELT 222
Query: 383 NLNMIMN------NKDKYVNENSDVKGMFAFQSEHD 472
NL + ++ K + ++E+ D K + E+D
Sbjct: 223 NLRICLHELQLNAEKGETIDESEDSKNTLVTEDEND 258
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 30.7 bits (66), Expect = 0.23
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 6/139 (4%)
Frame = +2
Query: 182 VNQNEENNIAQNYVKYVLENDRQLQGYKDLMPRRNDRLEMPPM-KFRYPKSLR----VNK 346
+N ++NNI VK EN++ D ++ E P+ + + P ++R +
Sbjct: 289 LNGTDDNNIVLREVKVSFENEKIESDDLDKNEEISEGEEYTPIEESKEPITVRRDSVIQI 348
Query: 347 NDNKPNLKQIKTNLNMIMNNKDKYVNENSDV-KGMFAFQSEHDSQKPQYTSLVSPKQNPL 523
+++ L + + LN +N D ++NS++ + +E + P+ +S V K+ P
Sbjct: 349 DESSAGLTDVISELNFTNHNDD---SKNSNITTSNDSPVNEVEPMAPELSSAVVEKKEP- 404
Query: 524 GNKDSQSESQIVVLTNDSD 580
+D +S S + TNDS+
Sbjct: 405 --EDYESISAVDENTNDSN 421
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 30.3 bits (65), Expect = 0.30
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Frame = +2
Query: 407 KDKYVNENSDVKGMFAFQSEHDSQKPQYTSLVSPKQNPLGNKDSQSESQIVVLTNDSDFG 586
+ K +NS G + DS QY + + NP DS + + + ++ D+
Sbjct: 21 RQKEAAKNSSTNGSVNIEGTQDSNDLQYNAHLFKSSNPKEEYDSAIDVRNDISQDEDDYK 80
Query: 587 EID--FDDLITTNPFQAMEEKNTKNYADNNSDPVKITGQSMNVLKTKE 724
+ D ++A +E YAD + DP++ QS ++ +E
Sbjct: 81 RTNDVNDSYRLVRQYEAPKEL-LNEYADESYDPMQ-ERQSKKQIQDRE 126
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 165 AWI-LNDCKTS*KSERLLCPMPISLVLVGLTVHSTIMYVTHMKHCILFCICV 13
AW L CK S + LCP+ L+ + L++H + YV FC+ V
Sbjct: 146 AWYQLYSCKKEESSNKFLCPLSKYLIYLFLSIH--LFYVFQSFPWTYFCLAV 195
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 30.3 bits (65), Expect = 0.30
Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 9/168 (5%)
Frame = +2
Query: 242 DRQLQGYKDLMPRRNDRLEMPPMKFRYPKSLRVNKNDNK--------PNLKQIKTNLNMI 397
+ ++ L P N + + P + + SL V ND+ P + + N+N I
Sbjct: 84 ESNIEKVNGLFPNDNSVIALKPNEEKLNSSLSVENNDSTYTDATLIAPKIGLDRPNINAI 143
Query: 398 MNNKDKYVNENSDVKGMFAFQSEHDSQKP-QYTSLVSPKQNPLGNKDSQSESQIVVLTND 574
+ D + +N S D P Q +L KQ+ L D+ + IVV ++
Sbjct: 144 TIDVDGHSLQNE-------ISSSTDKLSPSQSDALFEQKQDSLFWNDN---AVIVVSDSE 193
Query: 575 SDFGEIDFDDLITTNPFQAMEEKNTKNYADNNSDPVKITGQSMNVLKT 718
SD + + + M+EK A NS K+ S+ VL T
Sbjct: 194 SDDNNVRTKSSLNDHDKVNMKEKRNLELAFMNSKRKKLELPSLPVLST 241
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 30.3 bits (65), Expect = 0.30
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Frame = +2
Query: 377 KTNLNMIMNNKDKYVNENS----DVKGMFAFQSEHDSQKPQYTSLVSPKQNPLGNKDSQS 544
++N N++ +N +K++++++ DVKG + S +PQ S+V ++ L + +S
Sbjct: 617 QSNSNLLQDNAEKHISKSNLEKVDVKGDTSPNSVEQGIEPQAASVVGSPRSSLVSNNSLE 676
Query: 545 ESQIVVLTNDSDFGEIDFDDLITTNPFQAMEEKNTKN 655
E +L N I ++ P A+ + NT++
Sbjct: 677 EG--ALLKNSESLESI--YGYLSEEPDPALTKLNTED 709
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 29.9 bits (64), Expect = 0.40
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +2
Query: 548 SQIVVLTNDSDFGEIDFD-DLI--TTNPFQAMEEKNTKNYADNNSDPVKITGQSMNVLKT 718
S I L+ND + GE++F DL+ T F+ K+ ++P IT SMN
Sbjct: 759 SSIKSLSNDKNSGEVEFSGDLLFWETGTFEFRYHYGGKHLVMAKTEPFVITATSMNTTDV 818
Query: 719 KE 724
E
Sbjct: 819 DE 820
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 29.1 bits (62), Expect = 0.70
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 117 LCPMPISLVLVGLTVHSTIMYVTHMKH 37
+CPM ISL++ L ++ T Y+T H
Sbjct: 277 ICPMVISLIIAPLWIYFTFKYITTCIH 303
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 28.7 bits (61), Expect = 0.92
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +2
Query: 365 LKQIKTNLNMIMNNKDKYVNENSDVKGMFAFQSEHDSQKPQYTSLVSPKQNPLGNKDSQS 544
+K TNL+++M+ YVN++ +V+ + + + PQY + + KDS +
Sbjct: 355 VKLDSTNLDLMMDLAVSYVNQSLNVQALVCLEDWIVNSFPQYRNRFAKINERFEEKDSAN 414
Query: 545 E 547
+
Sbjct: 415 D 415
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 28.7 bits (61), Expect = 0.92
Identities = 29/115 (25%), Positives = 47/115 (40%)
Frame = +2
Query: 179 DVNQNEENNIAQNYVKYVLENDRQLQGYKDLMPRRNDRLEMPPMKFRYPKSLRVNKNDNK 358
D N NI +Y K+V + D +P N +L+ F P R N +D
Sbjct: 339 DHNSYVNENILPSYDKHVFDV------LWDGIPSENPQLQSG---FTTPNLSRRNSSDFG 389
Query: 359 PNLKQIKTNLNMIMNNKDKYVNENSDVKGMFAFQSEHDSQKPQYTSLVSPKQNPL 523
PN + + N + + + + S+ F F S S + T ++SP +PL
Sbjct: 390 PN-SPVNIHSNPVPISGQQPSSPASNSNANFFFGSSPQSMSSEQTDMMSPITSPL 443
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 479 KPQYTSLVSPKQNPLGNKDSQSESQIVVLTNDSDFGEIDFDDLITTNPF 625
K Q ++ +PK NP+ +S+ E + + + F IDF D ++ F
Sbjct: 220 KEQASTGNAPK-NPVNENESEDEEGLSLSEDGKKFANIDFGDYSSSEEF 267
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 27.1 bits (57), Expect = 2.8
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Frame = +2
Query: 158 IHAHLPEDVN-QNEENNIAQNYVKYVLENDRQLQGYKDLMPRRNDRLEMPPMKFRYPKSL 334
+ L E +N +N + + ++ + + + LQ Y++ + LE K L
Sbjct: 526 VEDELHEAINSKNVQQSRSEELEQQISKLTDNLQEYRNTVRELKLDLEKSKKKNEDLSKL 585
Query: 335 RVNKNDNKPNLKQIKTNLNMIMNNKDKYVNE--NSDVKGMFAFQSEHDSQKPQ 487
V K + NLK+ T+L KYV E N D++G +E + + Q
Sbjct: 586 EVEKVEEIANLKKELTHLAKQQEFGFKYVQEFSNEDLQGKLIEANEKNYKLTQ 638
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 26.6 bits (56), Expect = 3.7
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 545 ESQIVVLTNDSDFGEID-FDDLITTNPFQAMEEKNTKNYADNNSDPVKITGQSMNVLKTK 721
+S+IVVL N +F E+D +DD +P Q +E K P + G++ +V+ T
Sbjct: 140 QSKIVVLCNTLNFEELDVYDDESLYHP-QTHKEDCGKR-LQTRIQPEESVGKTGSVMSTS 197
Query: 722 EKKIDE 739
DE
Sbjct: 198 VTVTDE 203
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 380 TNLNMIMNNKDKYVNENSDVKGMFAFQSEHDSQKPQYTSL 499
T L ++NN+DK V EN +K S+ P T L
Sbjct: 872 TKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQL 911
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 380 TNLNMIMNNKDKYVNENSDVKGMFAFQSEHDSQKPQYTSL 499
T L ++NN+DK V EN +K S+ P T L
Sbjct: 872 TKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQL 911
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 380 TNLNMIMNNKDKYVNENSDVKGMFAFQSEHDSQKPQYTSL 499
T L ++NN+DK V EN +K S+ P T L
Sbjct: 872 TKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQL 911
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 380 TNLNMIMNNKDKYVNENSDVKGMFAFQSEHDSQKPQYTSL 499
T L ++NN+DK V EN +K S+ P T L
Sbjct: 872 TKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQL 911
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 380 TNLNMIMNNKDKYVNENSDVKGMFAFQSEHDSQKPQYTSL 499
T L ++NN+DK V EN +K S+ P T L
Sbjct: 872 TKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQL 911
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 380 TNLNMIMNNKDKYVNENSDVKGMFAFQSEHDSQKPQYTSL 499
T L ++NN+DK V EN +K S+ P T L
Sbjct: 872 TKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQL 911
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 380 TNLNMIMNNKDKYVNENSDVKGMFAFQSEHDSQKPQYTSL 499
T L ++NN+DK V EN +K S+ P T L
Sbjct: 872 TKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQL 911
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 380 TNLNMIMNNKDKYVNENSDVKGMFAFQSEHDSQKPQYTSL 499
T L ++NN+DK V EN +K S+ P T L
Sbjct: 872 TKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQL 911
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 380 TNLNMIMNNKDKYVNENSDVKGMFAFQSEHDSQKPQYTSL 499
T L ++NN+DK V EN +K S+ P T L
Sbjct: 872 TKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQL 911
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 380 TNLNMIMNNKDKYVNENSDVKGMFAFQSEHDSQKPQYTSL 499
T L ++NN+DK V EN +K S+ P T L
Sbjct: 872 TKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQL 911
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 380 TNLNMIMNNKDKYVNENSDVKGMFAFQSEHDSQKPQYTSL 499
T L ++NN+DK V EN +K S+ P T L
Sbjct: 872 TKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQL 911
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 326 KSLRVNKNDNKPNLKQIKTNLNMIMNN 406
K L +N+N NK L + +LN+ N+
Sbjct: 143 KDLSINRNTNKKALNAVSPSLNLSSNS 169
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 200 NNIAQNYVKYVLENDRQ 250
+NI+ NYV Y LEND +
Sbjct: 206 SNISFNYVYYTLENDSE 222
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 560 VLTNDSDFGEIDFDDLITTNPFQAMEEKNTKNYADNNSDPVKITGQSMNV 709
++T+ S+ + DFDD+ + FQA + ++S P +I S+N+
Sbjct: 1274 IITDFSNVMDPDFDDVSLLDQFQAQISSAFSSAFVDDSSP-EIVAMSLNI 1322
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 35 QCFICVTYMIVLCTVNPTKTREIGIGHSKRSLFHDVLQSFRIHAHLPEDVNQNEENNI 208
Q FIC+ V +N K G S + ++D +QSF+ ED+ Q E+++
Sbjct: 207 QSFICIIAFGVSDFINFQKEERNFRGKSNSAFYNDFIQSFK-----SEDLIQEYESSL 259
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 8.6
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +2
Query: 179 DVNQNEENNIAQNYVKYVLENDRQLQGYKDLMPRRNDRLEMPPMKFRYPKSLRVNKNDNK 358
D++Q + N+ +Y +LQ K L+P P FR +L+VN N N
Sbjct: 202 DLSQGLTHQPVPNHDEYAFSYPYELQR-KPLIPAH------PVPSFRPTSALKVNMNSNV 254
Query: 359 PNLKQIKTN 385
P+ ++ +
Sbjct: 255 PSSDSVRNS 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,930
Number of Sequences: 5004
Number of extensions: 55065
Number of successful extensions: 216
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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