Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4669
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    27   1.1  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    25   4.5  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   4.5  
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   6.0  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    24   7.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    24   7.9  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 253 GSYPHPPVGFTLNNITVSPL 194
           G+YPHP V  T+N    SPL
Sbjct: 135 GTYPHPCVHLTVNTDVSSPL 154


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 153 LGYRPPAGVVTRGARGQQPGLLA 85
           +G +PP GV+  GA G    LLA
Sbjct: 220 MGIKPPKGVILYGAPGTGKTLLA 242


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 259 VPGSYPHPPVGFTLNNIT 206
           VP SYP PP G+ L + T
Sbjct: 258 VPESYPVPPSGYPLTSST 275


>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 85  GKEPRLLSTCATGDDSSR 138
           GK P +LST  TG ++SR
Sbjct: 100 GKRPTILSTVNTGSNTSR 117


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 224 HVEQYYGVALVQSPTVCTEHDIWDLAIGRRLESSPVAHVDSS 99
           H+E+ YG  LV  P +    DI     G+   S+   HVD +
Sbjct: 84  HMEEVYGDDLVNEPRIAYSSDIVATFDGKDFGSN--LHVDDT 123


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 235 PVGFTLNNITVSPLYSLQRSAPSTTSGTWLSAA 137
           P    L+N TV+P  +   S  +TTSG   S+A
Sbjct: 604 PTSTPLSNSTVAPTSTFTSSGFNTTSGLPTSSA 636


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,692,898
Number of Sequences: 5004
Number of extensions: 32250
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)