Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4669
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73978-3|CAA98293.1|  501|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z81461-9|CAB62796.1|  597|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF348169-1|AAK37547.1|  597|Caenorhabditis elegans IKB-1 protein.      27   6.9  
AF039712-3|AAK21400.3|  393|Caenorhabditis elegans Hypothetical ...    27   6.9  
AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical ...    27   6.9  
U28409-1|AAC46592.3|  231|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AL132948-35|CAC51060.2|  887|Caenorhabditis elegans Hypothetical...    26   9.1  

>Z73978-3|CAA98293.1|  501|Caenorhabditis elegans Hypothetical
           protein ZC302.2a protein.
          Length = 501

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 247 YPHPPVGFTLNNITVSPL 194
           YP PP GFT + + VSP+
Sbjct: 108 YPPPPPGFTPHRVQVSPV 125


>Z81461-9|CAB62796.1|  597|Caenorhabditis elegans Hypothetical
           protein C04F12.3 protein.
          Length = 597

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 220 LNNITVSPLYSLQRSAPSTTSGTWLSAAGWSRHP 119
           ++ I+ S     Q+  PST+SGT    + W R+P
Sbjct: 469 VSRISTSESEDEQQPGPSTSSGTRRRRSEWDRNP 502


>AF348169-1|AAK37547.1|  597|Caenorhabditis elegans IKB-1 protein.
          Length = 597

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 220 LNNITVSPLYSLQRSAPSTTSGTWLSAAGWSRHP 119
           ++ I+ S     Q+  PST+SGT    + W R+P
Sbjct: 469 VSRISTSESEDEQQPGPSTSSGTRRRRSEWDRNP 502


>AF039712-3|AAK21400.3|  393|Caenorhabditis elegans Hypothetical
           protein F54D7.2 protein.
          Length = 393

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 342 STKCGVYSLLKATFTTV*ELSFTKPKYEYP-GRIHTLLL 229
           ST C +Y+L    + +   LSF  P  E P  R+ TL++
Sbjct: 321 STVCDIYNLTLGIYLSTIALSFYNPSNELPILRVSTLVI 359


>AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical
           protein Y47D7A.6 protein.
          Length = 446

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 274 QAQVRVPGSYPHPPVGF-TLNNITVSPLYSL 185
           Q   RVP +YP PP  + T     V+P Y +
Sbjct: 220 QCGYRVPDTYPTPPPSYPTAKKYPVAPTYQM 250


>U28409-1|AAC46592.3|  231|Caenorhabditis elegans Hypothetical
           protein T25D10.2 protein.
          Length = 231

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 259 VPGSYPHPPVGFTLNNITVSPLYSLQRSAPSTT 161
           +P +YP P V +T+N++ +S + S   + P+ T
Sbjct: 154 IPKAYPPPKVTWTVNSLPISHISSDYVAFPNGT 186


>AL132948-35|CAC51060.2|  887|Caenorhabditis elegans Hypothetical
           protein Y39B6A.47 protein.
          Length = 887

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 259 VPGSYPHPPVGFTLNNITVSPL 194
           V GS P PP+ F+LNN  ++ +
Sbjct: 637 VGGSQPTPPLDFSLNNSMIASI 658


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,626,527
Number of Sequences: 27780
Number of extensions: 194861
Number of successful extensions: 456
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)