Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4669
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.44 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.44 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.1  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.44
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = +2

Query: 8   GLYLVYTQVVYLTKESNCYFVWAHQPARS 94
           GL ++Y+ ++ ++   NC  +W    ++S
Sbjct: 59  GLAIIYSMLLIMSLVGNCCVIWIFSTSKS 87


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.44
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = +2

Query: 8   GLYLVYTQVVYLTKESNCYFVWAHQPARS 94
           GL ++Y+ ++ ++   NC  +W    ++S
Sbjct: 59  GLAIIYSMLLIMSLVGNCCVIWIFSTSKS 87


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 195  CTVSNGLHRARHLGLGYRPPAGVVTRGARGQQPGL 91
            C  +  L+   H  +G  P + V++   +GQ PG+
Sbjct: 1467 CGNTYQLYLTSHNKIGSSPSSPVLSVRTQGQAPGI 1501


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 195  CTVSNGLHRARHLGLGYRPPAGVVTRGARGQQPGL 91
            C  +  L+   H  +G  P + V++   +GQ PG+
Sbjct: 1463 CGNTYQLYLTSHNKIGSSPSSPVLSVRTQGQAPGI 1497


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,585
Number of Sequences: 438
Number of extensions: 2272
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)