Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4665
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 2.9
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 27 3.8
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 27 3.8
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 27 3.8
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 6.6
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C... 26 6.6
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.6
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 26 6.6
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 6.6
SPAP14E8.05c |||UPF0136 family protein|Schizosaccharomyces pombe... 26 6.6
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ... 25 8.7
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 25 8.7
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +2
Query: 140 LVRMGAACTVLLLLIYALHKWSSENIENTDVVLLADSETSYYKSHKDVYPV 292
L ++ A C LL HK+ T ++A Y HK++Y V
Sbjct: 1369 LRKLRATCLHLLFASLVAHKFDQPQHAQTRTKIIAIFFKDLYSPHKEIYSV 1419
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 206 SENIE-NTDVVLLADSETSYYKSHKDVYPVLKTELG 310
++NI N D + +A++ SY+KSH YP +K + G
Sbjct: 25 NKNIHSNPDFLAIAENWKSYWKSH---YPFVKNDKG 57
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 613 LRRSSVNNAVDGSHENGEALIMEDDDYRCLGQIFGVVPVF 494
L +NN VDG+H G + D+ L + V+P F
Sbjct: 354 LESDLLNNTVDGTHLEGSFTFL-DNGLTILDTVLAVLPTF 392
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 743 ISPSRCTYAQDALYHSTSLRNYLNFLLSHLYRR 645
+S +R YAQD++ S Y N SHL R
Sbjct: 152 VSDTRWYYAQDSILKSLKTLGYQNVYESHLKER 184
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 6.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 278 LCEICNKKFPNPQVALRQYFLCF 210
+C+IC +K NP V + C+
Sbjct: 256 ICKICGEKIKNPAVLSTGFVFCY 278
>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 6.6
Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 8/141 (5%)
Frame = +2
Query: 164 TVLLLLIYALHKWSSENIENTDVVLLADSET---SYYKSHKDVYPVL--KTELGNFEPRD 328
T+LL +H+ S E + ++A + ++Y SH + Y ++ E P
Sbjct: 17 TLLLKFTDFVHQHSVEQCNQLSMYIIASVNSLAEAFYGSHPEKYNIVFQSVEYAAHSPAI 76
Query: 329 XXXXXXXXXXXXX---YHMSQKHANDVAETESKYGMNIAASNDIAMNRSIPDTRLDECKY 499
Y S K ND+ ++ G + A + + LD K
Sbjct: 77 SVMHVCYLKELLRQGQYATSLKSFNDLEVSKHIPGSILLQYCMYAAYHCLGNNDLDSAKV 136
Query: 500 WHYPEDLAKTSVIIVFHNEGF 562
W++ T+ + FH E +
Sbjct: 137 WYFSILYIPTTTLTSFHEEAY 157
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -2
Query: 485 RAAYPVSICSLQYHLMQLYSFRIYSQSLLHHWHAS 381
+ A P+SI + +H++ Y F +Y Q ++ HA+
Sbjct: 139 QTALPISIAII-WHVISTYGFALYRQRIVVGKHAA 172
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 599 RTPAQFLHEVVLVDDFSDKDDLKENLDNSLK 691
RTP+ + ++F D D+L E+LDNS++
Sbjct: 426 RTPSPSAENYLTQENF-DSDNLSESLDNSVE 455
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = -1
Query: 147 RTNLPRLRFVILILILYLIHNKIIFVYNSSRPLASQFFLFKFLYPLA 7
R N + ++ I +LYLI K +++ + + F ++ F+Y +A
Sbjct: 559 RGNCEAILGILSIALLYLIEKKSVWLASLILGFSVHFKIYPFMYGIA 605
>SPAP14E8.05c |||UPF0136 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 230 VVLLADSETSYYKSHKDVYPVLKTELG 310
+VLLA S +YKS K V P++ T LG
Sbjct: 64 LVLLASSGPRFYKSRKPV-PMILTVLG 89
>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 414 LSVSATSLACFCDMWYGLPSSPGPLIIFLSLGSKLP 307
+ V+A + CD ++G GPL I +S K P
Sbjct: 111 IPVNAADIPPECDFYFGSEIRNGPLQIMVSTNGKGP 146
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 202 PFVQSIYEK*KYSARCSHTN*PTPSKVCYSHFNSLFN 92
P+ QS+YE K + + T+ K C + NS+ N
Sbjct: 155 PYAQSLYETAKQLLQNADTDLSKLEKTCVQYMNSVQN 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,014
Number of Sequences: 5004
Number of extensions: 59209
Number of successful extensions: 183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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