Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4665
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090     29   3.0  
04_01_0127 + 1368763-1369276,1385539-1385742,1386221-1386444,138...    28   6.9  
03_04_0206 - 18493178-18495310                                         28   6.9  

>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
          Length = 1037

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 734 SRCTYAQDALYHSTSLRNYLNFLLSHL 654
           S CT +Q A +H T + +Y++F  SHL
Sbjct: 142 STCTTSQPARFHRTLVASYISFPSSHL 168


>04_01_0127 +
           1368763-1369276,1385539-1385742,1386221-1386444,
           1386520-1386707,1394955-1394970
          Length = 381

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 557 GFSVLMRTVHSVINRTPAQFLHEVVLVDDFSDKDDLKENLDNSLKRWNGKVRLVR 721
           G +V M    SV+ R    +L +    DD   K+D +  + ++L+R N + R +R
Sbjct: 315 GLAVHMSAKKSVLERLDGYWLRQRKAEDDLCHKEDERRVVADTLRRPNAENRSLR 369


>03_04_0206 - 18493178-18495310
          Length = 710

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +2

Query: 389 ANDVAETESKYGMNIAASNDIAMNRSIPDTRLDECKYWHYPEDLAKTSVIIVFHNEGFS 565
           AN  A      G N+A  +D      +P   LD    +H+PE    T  ++     GFS
Sbjct: 433 ANKEAAKSKGKGKNVANDDDDMKPADLPQKWLDYKVEFHFPEPTLLTPPLLQLIEVGFS 491


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,772,017
Number of Sequences: 37544
Number of extensions: 361112
Number of successful extensions: 931
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)