Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4664
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              24   0.94 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.7  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   8.8  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    21   8.8  

>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 281 LETSEENMRGFAMFLAEIYTQLEDSQGGRIKT 376
           L   EEN R +  FLA I+ Q     G  + T
Sbjct: 58  LINEEENFRNYGCFLACIWQQTGVMNGSELST 89


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 246 AVLLRKTRLSAAWKLQRRICVDLLCSLPRFILSLRIVKEEE 368
           AVL    R     ++ R + V  +  LPRF+L  R  K+E+
Sbjct: 319 AVLNVNFRSPVTHRMARWVRVVFIQVLPRFLLIERPKKDED 359


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 100 KLYQTLGGCHC 132
           K Y   GGCHC
Sbjct: 239 KWYLPSGGCHC 249


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = +2

Query: 275 SGLETSEENMRGFAMFLAEIYTQLEDSQGGRIKTLGESLCKVFLHLLDTDKESNIKAVCQ 454
           SGL     + +     L + Y  LE   G   + L  S     + ++D D+++ +     
Sbjct: 15  SGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLLITNL 74

Query: 455 LLKL 466
            LKL
Sbjct: 75  WLKL 78


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 430 VKHQSCLSTAQVVGSGP 480
           + H SC S  +VV  GP
Sbjct: 13  IVHASCASVPKVVYDGP 29


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 403 KNFAETFTESLYSSSLT 353
           K + ET+  S+Y  S+T
Sbjct: 64  KKYCETYKNSIYDVSMT 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,759
Number of Sequences: 438
Number of extensions: 3226
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)