Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4662
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70312-1|CAA94383.1|  108|Caenorhabditis elegans Hypothetical pr...    32   0.32 
U53338-1|AAA96189.2|  152|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF125448-1|AAD12814.1|  578|Caenorhabditis elegans Hypothetical ...    29   3.0  

>Z70312-1|CAA94383.1|  108|Caenorhabditis elegans Hypothetical
           protein ZC168.2 protein.
          Length = 108

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 26  PQLYTLCRKDCFTTDYFKGCVEV 94
           P +   CR DCFTTD F+ C+++
Sbjct: 72  PNMRVECRADCFTTDAFRECLKL 94


>U53338-1|AAA96189.2|  152|Caenorhabditis elegans Hypothetical
           protein C05E11.6 protein.
          Length = 152

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 26  PQLYTLCRKDCFTTDYFKGCVEV 94
           P     CRKDCF  D F+ C+++
Sbjct: 92  PNTRVECRKDCFQNDTFQSCMKI 114


>AF125448-1|AAD12814.1|  578|Caenorhabditis elegans Hypothetical
           protein H14E04.2b protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 371 KKRNGIHNFTALHKAETNKKCQVTILTSAFYPQRILVYMRRKFNYIY 511
           KK++  HN   +H+ ET K  +V  +    Y   I+     K N+++
Sbjct: 14  KKQDSDHNIVKIHREETAKSDKVLHIGGGSYAGLIINRYEEKSNFVF 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,980,739
Number of Sequences: 27780
Number of extensions: 275567
Number of successful extensions: 621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)