Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4658
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    32   0.051
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    30   0.27 
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    28   1.1  
SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual       27   1.5  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    27   1.9  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    26   3.4  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   4.5  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   5.9  
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    25   7.8  

>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 32.3 bits (70), Expect = 0.051
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +1

Query: 82  SARCTLCHKVFRTLNSLNNHKSIYHRRQRNPPPLSQPQNLSTAPEP 219
           SA CT C  +   + SLN  KS   R+  +P P S P +  T   P
Sbjct: 82  SASCTGCPALNNRIRSLNASKSQSGRKSLSPNPSSVPSSTETKASP 127


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 40  SSATREQQHLQPLHSARCTLCHKVFRTLNSLNNHKSIYHR 159
           S A   +Q   P  + RC  C  +F   + L NHK  YH+
Sbjct: 124 SVANASKQPNMPNATFRCDKCDMMFVKQSGLTNHKRTYHQ 163


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 58  QQHLQPLHSARCTLCHKVFRTLNSLNNH 141
           Q H++  H   C++C + F+T   L +H
Sbjct: 195 QNHIREAHVPSCSICGRQFKTAAHLRHH 222


>SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 198

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 419 C*DIHLFFEVVGSVVGDDPPHENIPK 496
           C  I +  ++  S+VGD  PHEN+ K
Sbjct: 62  CLKIAVVHDMAESIVGDITPHENVSK 87


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 91  CTLCHKVFRTLNSLNNHKS 147
           C +C+K FR+ N L NH++
Sbjct: 272 CMVCNKNFRSQNQLENHEN 290


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 88  RCTLCHKVFRTLNSLNNHKSIYH 156
           RC +C K ++ LN L  H++  H
Sbjct: 400 RCEVCSKRYKNLNGLKYHRTHSH 422


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = +1

Query: 148 IYHRRQRNPPPLSQPQNLSTAPEPKL--NPP 234
           +YH  +  P   S+P N S  P   L  NPP
Sbjct: 448 VYHNNRNPPRTNSRPSNASVPPPSSLHKNPP 478


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 505 PAPLWNVLVGRIIADHT-PYDFKEQMNVLTKY 413
           P P WNVL+   + D    Y F    NV T+Y
Sbjct: 312 PFPYWNVLILPFLVDAVDAYTFGVLKNVQTEY 343


>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 70  QPLHSARCTLCHKVFRTLNSLNNHKSIYHR 159
           +PLH A C  C      + S N+HK ++ +
Sbjct: 132 EPLHDAICISCTNKSFFIISKNDHKVLFEK 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,872
Number of Sequences: 5004
Number of extensions: 36707
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)