Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4658
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      79   4e-17
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    48   9e-08
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    33   0.002
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    30   0.014
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.2  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   2.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 78.6 bits (185), Expect = 4e-17
 Identities = 33/39 (84%), Positives = 36/39 (92%)
 Frame = +1

Query: 52  REQQHLQPLHSARCTLCHKVFRTLNSLNNHKSIYHRRQR 168
           +EQQH QPL+SA C LCHKVFRTLNSLNNHKSIYHRRQ+
Sbjct: 391 KEQQHFQPLNSAVCALCHKVFRTLNSLNNHKSIYHRRQK 429



 Score = 29.5 bits (63), Expect = 0.025
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +3

Query: 3   EVCGKLLSTRLTLKR 47
           +VCGK LST+LTLKR
Sbjct: 375 DVCGKTLSTKLTLKR 389



 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +1

Query: 91  CTLCHKVFRTLNSLNNHKSIYHRRQRN 171
           C +C K   T  +L  HK   H +  N
Sbjct: 374 CDVCGKTLSTKLTLKRHKEQQHFQPLN 400


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 47.6 bits (108), Expect = 9e-08
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 5/46 (10%)
 Frame = +1

Query: 40  SSATREQQHLQPLHSAR-----CTLCHKVFRTLNSLNNHKSIYHRR 162
           +S TR ++H+Q +H+       C +C +V+ +LNSL NHKSIYHR+
Sbjct: 13  TSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYHRQ 58



 Score = 25.0 bits (52), Expect = 0.53
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 88  RCTLCHKVFRTLNSLNNHKSIYHRRQRNPP 177
           RC  C+K+  +L  L  H    H R    P
Sbjct: 4   RCEPCNKILTSLTRLRRHIQNVHTRPSKEP 33


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 91  CTLCHKVFRTLNSLNNHKSIYHR 159
           C  C++ +RT NSL  HKS+ HR
Sbjct: 38  CEFCNRRYRTKNSLTTHKSLQHR 60


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 30.3 bits (65), Expect = 0.014
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 61  QHLQPLHSARCTLCHKVFRTLNSLNNHKSIYHR 159
           +H +     RC +C +V+ + NSL  H   YH+
Sbjct: 28  KHAERQEEYRCVICERVYCSRNSLMTHIYTYHK 60



 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 3  EVCGKLLSTRLTLKR 47
          ++CGK+L ++ +LKR
Sbjct: 9  QLCGKVLCSKASLKR 23


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 88  RCTLCHKVFRTLNSLNNH 141
           +CTLCH+ F +  ++  H
Sbjct: 261 KCTLCHETFGSKKTMELH 278



 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +1

Query: 88  RCTLCHKVFRTLNSLNNHKSIYHRRQRNP 174
           +C LC K F   N   +H   + +   +P
Sbjct: 63  QCLLCQKAFDQKNLYQSHLRSHGKEGEDP 91


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 481 VGRIIADHTPYDFKEQMNVLTKYILFKSSTKCELYI*SFSNK*GRNH-ENLF 329
           + +++ DHT    K  M +L +  + +++  C L    F N    NH +N+F
Sbjct: 14  LSKVMLDHTINSKKTIMRILKEVCVLQANRACILIKDLFDNV--HNHIQNIF 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,513
Number of Sequences: 438
Number of extensions: 2719
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)