Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4657
         (489 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    39   0.052
UniRef50_Q3WAH2 Cluster: ABC transporter, family 3; n=2; Frankia...    33   2.6  
UniRef50_Q7NBT1 Cluster: CrmB; n=2; Mycoplasma gallisepticum|Rep...    32   6.0  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 39.1 bits (87), Expect = 0.052
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -1

Query: 246 RCVDELTAHLMLSGYWSP 193
           R VDELTAHL+LSGYWSP
Sbjct: 158 RWVDELTAHLVLSGYWSP 175


>UniRef50_Q3WAH2 Cluster: ABC transporter, family 3; n=2;
           Frankia|Rep: ABC transporter, family 3 - Frankia sp.
           EAN1pec
          Length = 309

 Score = 33.5 bits (73), Expect = 2.6
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = -2

Query: 479 WCSESNTHINISLSIKYMYFLYGYQISSQWDA*FSSYNGTSVKTAVVLYISI 324
           WCS ++T   +S+++  +  + G  +S QWD         ++ TA+VL +++
Sbjct: 237 WCSRTSTMTAVSIAVAVVCGVVGLAVSEQWDVAAGGAIVLTLATALVLSLAL 288


>UniRef50_Q7NBT1 Cluster: CrmB; n=2; Mycoplasma gallisepticum|Rep:
           CrmB - Mycoplasma gallisepticum
          Length = 921

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 4   NSGTYIYRY-DIDFIQFKMKKPLNYNNIIRLKKF 102
           N   ++YR  +IDFI + +  PLN+N I   K F
Sbjct: 546 NKPNWLYRLSNIDFINYDINSPLNFNPIFEFKDF 579


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 494,598,720
Number of Sequences: 1657284
Number of extensions: 9461093
Number of successful extensions: 14113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14112
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)