Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4656
         (326 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O45768 Cluster: Putative uncharacterized protein srx-44...    31   4.9  
UniRef50_Q09F50 Cluster: Ymf71; n=1; Tetrahymena paravorax|Rep: ...    30   8.6  

>UniRef50_O45768 Cluster: Putative uncharacterized protein srx-44;
           n=2; Caenorhabditis|Rep: Putative uncharacterized
           protein srx-44 - Caenorhabditis elegans
          Length = 294

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 8   LMNEVFLITFGILLWTVQNYIYSFFLFFTN 97
           + ++ +++T+ I+ WT+   IYS+F FF N
Sbjct: 107 IFSKNYVLTYIIINWTLPPVIYSYFFFFYN 136


>UniRef50_Q09F50 Cluster: Ymf71; n=1; Tetrahymena paravorax|Rep:
           Ymf71 - Tetrahymena paravorax
          Length = 99

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 45  YYGLSKIIYIAFFYFLLTLSVNYYY*PHYL 134
           ++ L+ ++YI FFYF   L + ++   +YL
Sbjct: 5   FFSLTSLVYIFFFYFFFNLIIQFHIIIYYL 34


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 261,182,723
Number of Sequences: 1657284
Number of extensions: 3630457
Number of successful extensions: 8002
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7977
length of database: 575,637,011
effective HSP length: 85
effective length of database: 434,767,871
effective search space used: 9999661033
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)