Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4656
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    25   3.8  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    24   5.1  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    23   8.8  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    23   8.8  
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    23   8.8  

>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 112 ITINRIIYDSHPIILSHWI*D 174
           +T+N  + D+H  +  HW+ D
Sbjct: 241 VTLNTNLSDAHIFVFKHWVID 261


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 57  TVHSKMPNVIRNTSFIRYY 1
           T   K+PN++RN  F+R +
Sbjct: 504 TTKLKVPNLVRNDKFVRLW 522


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 261 YNVVFPTVALSWVSSHELTRT 323
           YNV +  + LS +SSH L ++
Sbjct: 2   YNVTYRLLRLSLISSHSLRKS 22


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 150 DRVRIIDNAVNSNN*QIALVKNRKKLYI*FWTVHS 46
           DR  +I N V+    +  ++  R+     FW VHS
Sbjct: 424 DRTNVIQNLVSRVFLEQVMIYTRQNAGYDFWQVHS 458


>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 258 EYNVVFPTVALSWVSSHEL 314
           E ++ FP  +L W+++H++
Sbjct: 3   ELHLSFPAYSLCWINNHQM 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,136,883
Number of Sequences: 5004
Number of extensions: 16732
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)