Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4656
         (326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical p...    31   0.20 
U97008-16|AAB52300.1|  303|Caenorhabditis elegans Serpentine rec...    25   9.7  

>Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical
           protein T10C6.4 protein.
          Length = 294

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 8   LMNEVFLITFGILLWTVQNYIYSFFLFFTN 97
           + ++ +++T+ I+ WT+   IYS+F FF N
Sbjct: 107 IFSKNYVLTYIIINWTLPPVIYSYFFFFYN 136


>U97008-16|AAB52300.1|  303|Caenorhabditis elegans Serpentine
           receptor, class sx protein24 protein.
          Length = 303

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 36  LAFYYGLSKIIYIAFFYFLLTLSVNYYY 119
           LA + G+ ++  I +      LS+NYYY
Sbjct: 96  LALFIGIDRVYVIVYPGKYAKLSINYYY 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,093,565
Number of Sequences: 27780
Number of extensions: 89594
Number of successful extensions: 224
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)