Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4649
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    30   0.38 
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    29   0.87 
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    27   2.7  

>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 47  INNYLFYGFKS-IKIDFCLYIMFYISFKIH*LNMLIYFANFLQYNVF 184
           INN    G +S   +  CLYI+  IS   H   MLI F++ LQ NVF
Sbjct: 122 INNNFIKGRRSQYVVASCLYIVCRISKTSH---MLIDFSDILQINVF 165


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 17  FFFYFMIITLINNYLFYGFKSIKIDFCLYIMFYISFKIH*LNMLIYF 157
           F F + I T I  YLF   K ++  F +Y++  +S ++H + +L  F
Sbjct: 109 FAFVYWITTAIVGYLF---KIVRAPFYIYVLLILSKRLHSIFILRLF 152


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 619 LEIPRISMFIYTNLSFISKNLSGSYVFKSNFKKRQPYL 506
           L I R  +F     + ++KN S S   K   KKRQPY+
Sbjct: 165 LPIARRPLFPGFYKAIVTKNPSVSEAIKELIKKRQPYI 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,967
Number of Sequences: 5004
Number of extensions: 59630
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)