Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4647
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    27   5.5  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    27   5.5  
AF125965-3|AAD14757.1|  266|Caenorhabditis elegans Hypothetical ...    27   9.7  

>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 478 IGRIGYRAPPRVFFFFF 428
           IG  G+ APP VF FFF
Sbjct: 348 IGAFGHEAPPLVFKFFF 364


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 478 IGRIGYRAPPRVFFFFF 428
           IG  G+ APP VF FFF
Sbjct: 346 IGAFGHEAPPLVFKFFF 362


>AF125965-3|AAD14757.1|  266|Caenorhabditis elegans Hypothetical
           protein H43I07.1 protein.
          Length = 266

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 395 LSSGMVYLTARKKKKKNSRGGPVPNSPYSES 487
           +  G+V  T+R + K+   G P+  +P SES
Sbjct: 33  IGRGLVRFTSRLRMKRLGLGEPISQAPISES 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,754,154
Number of Sequences: 27780
Number of extensions: 221158
Number of successful extensions: 426
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)