Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4646
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    28   1.5  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    27   2.0  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.7  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    27   3.6  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    27   3.6  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    26   4.7  

>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 216 GVKIYKSADVIQTGAPRSLDPLSRLRTYLETHSLSVEVKGTDILDAVTGAG-RALQDTVT 392
           G+K  KS  + +  AP    P+S L   +ET S+   V G +  D VT  G + L+D  T
Sbjct: 357 GIKSAKSLGLNKDDAPVEGPPVSHLEKDVETPSVHDSVLGFN--DTVTNLGKKGLKDGTT 414

Query: 393 S 395
           +
Sbjct: 415 N 415


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +3

Query: 267 SLDPLSRLRTYLETHSLSVEVKGTDILDAVTGAGRALQDTVTSFVDDDAAEESRGKKKKA 446
           S+  L +L  Y   HS+S+E+    +L     +          F  DD  EE    +K+A
Sbjct: 490 SVQSLKQLEVYPIRHSVSIEMPSEKLLSPRLYSSSTPSSPTKGFQKDD--EEDSENRKQA 547

Query: 447 SKI 455
            K+
Sbjct: 548 DKV 550


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = +3

Query: 90  TSYSENDLDDCLKKDPTSCLKNKFFSYVDKYIGQKDSFALTDGVKIYKSADVIQTGAPRS 269
           +S + ++  +CL K    C + K F Y+D+   Q    + T G   Y   +   T A  S
Sbjct: 761 SSRAPSEAINCLSKLAFQCHETKRFLYIDE--KQSSEISFTSGELEYSDPN-DPTKATHS 817

Query: 270 LDPLSRLRTYLETHSL 317
           + P S + + + T S+
Sbjct: 818 VLPWSAMWSIISTQSV 833


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 184 IYLSTYEKNLFFRQDVGSFFKQSSRS 107
           ++LS  +K+L FRQ+   ++  SSRS
Sbjct: 194 VFLSLLQKDLIFRQNKPVYWSSSSRS 219


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 228 YKSADVIQTGAPRSLDPLSRLRTYLETHSLSVEVKGTDILDAVTGAGRALQDTVTSFVD 404
           Y + D I  G P       +L    ++     ++KGT ++DA  G G A    +  ++D
Sbjct: 186 YGTPDAI--GEPTERGYFEKLSKAYQSLMTGKKIKGTVLIDAANGVGAAKIKELAKYID 242


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 266 ISRPAFKTEDLFGNSFS*C*SERY*YFGCC 355
           + +P F T +L G  F    + R   FGCC
Sbjct: 307 LKQPVFMTNNLIGGFFQRLEASRKYIFGCC 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,431
Number of Sequences: 5004
Number of extensions: 54551
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)