Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4646
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0037 + 20113866-20114006,20114389-20114415,20116511-201165...    30   1.6  
07_03_1063 + 23693549-23694833,23695102-23695146,23695495-23695550     29   3.7  
11_01_0631 - 5063622-5063635,5065050-5065203,5065280-5065441,506...    28   6.5  
08_02_1250 - 25586442-25587023,25587141-25587827,25588389-25589492     28   8.6  

>03_05_0037 +
           20113866-20114006,20114389-20114415,20116511-20116582,
           20118237-20118365,20118557-20118589
          Length = 133

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +3

Query: 126 KKDPTSCLKNKFFSYVDKYIGQKDSFALTDGVKIYKSADVIQ-----TGAPRSLDPLSRL 290
           KK     LKN F    D Y+ Q D+  L+DG+ +Y++AD         G  RS  PL   
Sbjct: 54  KKQVRKTLKNFFLGRNDLYLLQVDTSKLSDGL-VYEAADDSNYFPHFYGPGRSFAPLQLD 112

Query: 291 RTYLETHSLSVEVK 332
               E   + +EV+
Sbjct: 113 AVIKEAEKIVLEVE 126


>07_03_1063 + 23693549-23694833,23695102-23695146,23695495-23695550
          Length = 461

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 333 GTDILDAVTGAGRALQDTVTSFVDDDAAEESRGKKKKAS 449
           G+D   AV+GAG A  D  +S  D  AA  +  KK  A+
Sbjct: 391 GSDKSAAVSGAGAAASDADSSGADSGAAAAAAAKKPMAA 429


>11_01_0631 -
           5063622-5063635,5065050-5065203,5065280-5065441,
           5065657-5066633,5067502-5067523
          Length = 442

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 347 GCCDWCRKSSSRYCNF 394
           GC D+CR + S YC F
Sbjct: 283 GCSDFCRNAGSGYCGF 298


>08_02_1250 - 25586442-25587023,25587141-25587827,25588389-25589492
          Length = 790

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 300 LETHSLSVEVKGTDILDAVTGAGRALQDTVTSFVDDDAAEESRGKKK 440
           LET  L  EV+   +L A +G    L+D++   V+DD  E+    KK
Sbjct: 399 LETKKLETEVESELVLAARSG----LEDSIEHLVEDDKREKDMLSKK 441


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,887,617
Number of Sequences: 37544
Number of extensions: 358155
Number of successful extensions: 952
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)