Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4646
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006635-1|AAY86194.1|  201|Caenorhabditis elegans Hypothetical ...    33   0.27 
AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine r...    30   1.9  
U29488-8|AAA68777.1|  320|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z98262-3|CAD44156.1|  454|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z98262-2|CAD44155.1|  484|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z98262-1|CAB10932.1|  502|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z74043-1|CAA98547.1|  368|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z71260-4|CAD44116.1|  454|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z71260-3|CAD44115.1|  484|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z71260-2|CAA95799.1|  502|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z99266-1|CAB16464.1|  292|Caenorhabditis elegans F15C11.2 protein.     28   7.7  

>AC006635-1|AAY86194.1|  201|Caenorhabditis elegans Hypothetical
           protein F38G1.3 protein.
          Length = 201

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 22/61 (36%), Positives = 33/61 (54%)
 Frame = -3

Query: 512 RKRHYCHHLHSHNRHYWPKDF*GFLLFPSAFFRGVIIDEGSYSILKSSSCTSHSIQNIST 333
           RK+H+ HH H  N  ++ K     L+FP+  F     D G Y  LKS++ +S S+  I+ 
Sbjct: 139 RKKHHHHHHHKENSSHYHKH--DQLVFPNNTFAQQYRDSGYY--LKSAT-SSFSLMIITA 193

Query: 332 F 330
           F
Sbjct: 194 F 194


>AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine
           receptor, class z protein5 protein.
          Length = 351

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 443 FLLFPSAFFRGV-IIDEGSYSILKSSSCTSHSIQNIST 333
           F+ FP   F GV IID+G Y  LK  +C   S+ N +T
Sbjct: 261 FVTFPFIVFNGVMIIDQGYYGFLK-LACIMLSVINFAT 297


>U29488-8|AAA68777.1|  320|Caenorhabditis elegans Hypothetical
           protein C56C10.9 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
 Frame = +3

Query: 27  MWRTLFIFALIAATSALPAQDTSYSENDLDDCLKKDPTSCLKNKFFSYV--DKYIGQKDS 200
           M + L    +I++  ++P   + + END  + +  +    L +KF   +     +   DS
Sbjct: 1   MLKPLLAIFMISSALSIPLNRSDFLENDHVELMPLEKDGELNDKFRQEMIFSHNLDPSDS 60

Query: 201 FALTDGVK-IYKSADVIQTGAPRSLDPLSRLRTYLETH 311
             L++ +K ++K  DV   G   + +   ++R  +E H
Sbjct: 61  KQLSESIKEMFKKTDVNDDGFLTAGELKQQIRKNMEEH 98


>Z98262-3|CAD44156.1|  454|Caenorhabditis elegans Hypothetical
           protein F15C11.2c protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 443 SLKNPWANNGDYGYEDDGNNASCDRSHSVNS 535
           +L NPWA+N +    +  NN S D +  ++S
Sbjct: 268 ALPNPWASNANQATNNQSNNRSADFNSLLDS 298


>Z98262-2|CAD44155.1|  484|Caenorhabditis elegans Hypothetical
           protein F15C11.2b protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 443 SLKNPWANNGDYGYEDDGNNASCDRSHSVNS 535
           +L NPWA+N +    +  NN S D +  ++S
Sbjct: 250 ALPNPWASNANQATNNQSNNRSADFNSLLDS 280


>Z98262-1|CAB10932.1|  502|Caenorhabditis elegans Hypothetical
           protein F15C11.2a protein.
          Length = 502

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 443 SLKNPWANNGDYGYEDDGNNASCDRSHSVNS 535
           +L NPWA+N +    +  NN S D +  ++S
Sbjct: 268 ALPNPWASNANQATNNQSNNRSADFNSLLDS 298


>Z74043-1|CAA98547.1|  368|Caenorhabditis elegans Hypothetical
           protein T19B10.2 protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = +3

Query: 6   GTRADCIMWRTLFIFALIAATSALPAQDTSYSENDLDDCLKKDPTSCLKNKFFSYVDKYI 185
           G   +C + RT F    I A  A PA+D      ++   + ++   CL+ K    +  + 
Sbjct: 92  GPLRECSICRT-FAAGAIKAIKATPAEDQKCIRTEVSKAIAREANYCLQKK----IANFA 146

Query: 186 GQKDSFALTDGVKIYKSA 239
           G  D   L +G   YK +
Sbjct: 147 GVPDIPDLEEGSFQYKDS 164


>Z71260-4|CAD44116.1|  454|Caenorhabditis elegans Hypothetical
           protein F15C11.2c protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 443 SLKNPWANNGDYGYEDDGNNASCDRSHSVNS 535
           +L NPWA+N +    +  NN S D +  ++S
Sbjct: 268 ALPNPWASNANQATNNQSNNRSADFNSLLDS 298


>Z71260-3|CAD44115.1|  484|Caenorhabditis elegans Hypothetical
           protein F15C11.2b protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 443 SLKNPWANNGDYGYEDDGNNASCDRSHSVNS 535
           +L NPWA+N +    +  NN S D +  ++S
Sbjct: 250 ALPNPWASNANQATNNQSNNRSADFNSLLDS 280


>Z71260-2|CAA95799.1|  502|Caenorhabditis elegans Hypothetical
           protein F15C11.2a protein.
          Length = 502

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 443 SLKNPWANNGDYGYEDDGNNASCDRSHSVNS 535
           +L NPWA+N +    +  NN S D +  ++S
Sbjct: 268 ALPNPWASNANQATNNQSNNRSADFNSLLDS 298


>Z99266-1|CAB16464.1|  292|Caenorhabditis elegans F15C11.2 protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 443 SLKNPWANNGDYGYEDDGNNASCD 514
           +L NPWA+N +    +  NN S D
Sbjct: 268 ALPNPWASNANQATNNQSNNRSAD 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,005,424
Number of Sequences: 27780
Number of extensions: 303648
Number of successful extensions: 949
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)