Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4644
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   2.7  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.6  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    25   8.4  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +2

Query: 161 IRTYSSTKWRRFTRFCSQMILFNFSLFHENMIKIYL-FSILIR 286
           ++ YSST+        S+++L+ F+ F EN++K+ +  SI +R
Sbjct: 422 VQLYSSTESDLLKEGLSRILLYFFTYFPENILKLKIDTSIFLR 464


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 615 IKNSSDEDSAPKSRSRNSHSKVKSDLWEENPD 710
           +K +S+  S  ++ SRN  +KVK D   E P+
Sbjct: 133 LKQNSNNISKKQNSSRNDDTKVKKDTTIERPE 164


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 615 IKNSSDEDSAPKSRSRNS-HSKVKSDLWEE 701
           I  SS +DS  K  S NS ++K + D W E
Sbjct: 136 IARSSSDDSESKVESTNSFNAKKRKDAWTE 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,195
Number of Sequences: 5004
Number of extensions: 45294
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)