Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4643
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2... 192 3e-50
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa... 179 4e-46
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 28 1.1
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 28 1.4
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe... 28 1.4
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 27 2.4
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 27 3.2
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom... 27 3.2
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 4.3
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 26 4.3
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 25 7.5
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 9.9
>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 192 bits (469), Expect = 3e-50
Identities = 94/156 (60%), Positives = 118/156 (75%), Gaps = 1/156 (0%)
Frame = +2
Query: 128 MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGK 307
M I+ + ARQI+DSRGNPTVEVDL TE G+ RA VPSGASTG+ EALE+RD K+++ GK
Sbjct: 1 MAIQKVFARQIYDSRGNPTVEVDLTTETGIHRAIVPSGASTGIWEALEMRDGDKTKWGGK 60
Query: 308 GVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXX 487
GVL A+ N+N +IAP + KANL+VT Q+ DE +LKLDGTENKSKLGANAILGVS+
Sbjct: 61 GVLKAVGNVNNIIAPAVVKANLDVTDQKAADEFLLKLDGTENKSKLGANAILGVSMAICR 120
Query: 488 XXXXXXNVPLYKHLADLAG-NNDIVLPVPAFNVING 592
+PL+K++A+ G VLPVP+FNV+NG
Sbjct: 121 AGAAQKKLPLWKYIAENFGTKGPYVLPVPSFNVLNG 156
Score = 45.6 bits (103), Expect = 7e-06
Identities = 20/26 (76%), Positives = 21/26 (80%)
Frame = +3
Query: 591 GGSHAGNKLAMQEFMIFPTGASTFSE 668
GGSHAG LA QEFMI PTGA +FSE
Sbjct: 156 GGSHAGGDLAFQEFMILPTGAPSFSE 181
>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 440
Score = 179 bits (435), Expect = 4e-46
Identities = 85/154 (55%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Frame = +2
Query: 134 IKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGV 313
I+ I +R I+DSRGNPTVEV+L TELG FR+ VPSGASTG EA ELRDN K+++ GKGV
Sbjct: 4 IQKIYSRSIYDSRGNPTVEVELTTELGTFRSMVPSGASTGEWEAKELRDNDKNKWGGKGV 63
Query: 314 LTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXXX 493
A+ N+N +I P L K+++++T QR IDE M+KLDGT +KSKLGAN+I+GVS+
Sbjct: 64 TIAVHNVNNIIGPALVKSDIKITDQRGIDEFMIKLDGTNDKSKLGANSIVGVSMAVARAA 123
Query: 494 XXXXNVPLYKHLADLAGNNDI-VLPVPAFNVING 592
+PLY+++ LAG+ +PVP+FNV+NG
Sbjct: 124 AAFLKIPLYEYIGKLAGSKTTECIPVPSFNVLNG 157
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/26 (69%), Positives = 18/26 (69%)
Frame = +3
Query: 591 GGSHAGNKLAMQEFMIFPTGASTFSE 668
GG HAG LA QEFMI P A TFSE
Sbjct: 157 GGRHAGGDLAFQEFMIMPIKAPTFSE 182
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +2
Query: 164 DSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINEL 343
D +G +VD ++A +ST LE R N + E V TAI + E
Sbjct: 140 DEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDD-AVHTAILALKET 198
Query: 344 IAPELTKANLEV 379
ELT+ N+E+
Sbjct: 199 FEGELTEDNIEI 210
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 27.9 bits (59), Expect = 1.4
Identities = 23/98 (23%), Positives = 42/98 (42%)
Frame = +2
Query: 110 TSSVLKMVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIK 289
TS V VI++ + G P + ++ LG F + S S + ++ + +
Sbjct: 1088 TSEVTLSVIRARPGLLVKMVDGEPILTQQVIQNLGGFSSEEVSMVSRCIRSRTQIMNMLA 1147
Query: 290 SEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDE 403
+E H + K +NE +A L + N E T E+ +
Sbjct: 1148 TEIHYAASVGQNKYLNEYVA-SLIRTN-EKTHSTELSQ 1183
>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 396
Score = 27.9 bits (59), Expect = 1.4
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Frame = +2
Query: 104 KSTSSVLKMVIKSIKARQIFDSRGNPTV-EVDLVTELGLFRAAVPSGASTGVHEALELRD 280
K +V+K I SIK ++ + +G TV + D+ + G A G T + + D
Sbjct: 172 KGEMAVMKNDIASIKG-EMAEMKGEMTVMKNDIASIKG--EMAEMKGEMTIMKSDI---D 225
Query: 281 NIKSEY-HGKGVLTAIKNINELIAPELTKANLEVTQQRE-IDELMLKLDGTENKSK 442
++K E KG +T +KN + + E T EVT ++ I +L K+D + +++
Sbjct: 226 SVKGEMAEMKGEMTIMKNDIDSVKGETTTLKGEVTAMKDSISQLDRKIDLLDQRTE 281
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 27.1 bits (57), Expect = 2.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 607 PACDPPIDHIESWY 566
PAC PPI+ + WY
Sbjct: 200 PACSPPIELVNRWY 213
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 26.6 bits (56), Expect = 3.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 610 FPACDPPIDHIES 572
FP+C PP+DH+ S
Sbjct: 328 FPSCHPPVDHLIS 340
>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 26.6 bits (56), Expect = 3.2
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Frame = +2
Query: 386 QREIDELMLKLDGTENKSKLGANAI--LGVSLXXXXXXXXXXNVPLYKHL--ADLAGNND 553
Q+E +L DGT N++KLG G + + K L + G +
Sbjct: 51 QKEFGNEVLHEDGTLNRAKLGQAVFQDAGKRSLLNSIIHPAVRLEMLKELLRCYVRGYSI 110
Query: 554 IVLPVPAFNVINGRITCWK*TC 619
++L VP + CWK C
Sbjct: 111 VILDVPLLFEAKMQFICWKTIC 132
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 436 FVLSAIQLKHEFINLSLLGYFKVGFG 359
F +S+I+ KH++IN+ Y +G G
Sbjct: 113 FSISSIKTKHDYINIIKKHYVSLGVG 138
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 643 GKIMNSCMASLFPACDPPIDHIESWYR*NNVI 548
GK + C+ S P C ID +E W R NV+
Sbjct: 147 GKENDVCLYSCNPTCKSNIDELELW-RTENVV 177
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -1
Query: 601 CDPPIDHIESWYR*NNVIISSQISQVLV 518
C +++++SWY+ N I++ +SQ L+
Sbjct: 773 CFASLENVDSWYQDINEIVNIIVSQRLI 800
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.0 bits (52), Expect = 9.9
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 233 PSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINEL--IAPELTKANLEVTQQREIDEL 406
P A+ +H+ E +N+KSE+ KG + A K +E + + KA E + I ++
Sbjct: 429 PILANIYLHQLDEFIENLKSEFDYKGPI-ARKRTSESRHLHYLMAKAKRENADSKTIRKI 487
Query: 407 MLKLDGTENK 436
+++ NK
Sbjct: 488 AIEMRNVPNK 497
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,131
Number of Sequences: 5004
Number of extensions: 46307
Number of successful extensions: 119
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -