Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4643
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 192 2e-49
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 170 7e-43
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 163 1e-40
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 132 2e-31
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 105 3e-23
10_08_0039 - 14355746-14355772,14356713-14356772,14356873-143569... 30 1.9
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 29 3.3
01_01_0796 + 6190931-6192745 29 4.4
09_06_0040 - 20432008-20432091,20432152-20432229,20432322-204329... 28 5.9
07_03_0482 + 18589573-18589728,18589889-18590065,18590518-185906... 28 7.7
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 192 bits (469), Expect = 2e-49
Identities = 97/155 (62%), Positives = 119/155 (76%), Gaps = 1/155 (0%)
Frame = +2
Query: 131 VIKSIKARQIFDSRGNPTVEVDLVTELG-LFRAAVPSGASTGVHEALELRDNIKSEYHGK 307
V++SI+ARQI DSRGNPTVEVDLV G L R+AVPSGASTG++EALELRD + Y GK
Sbjct: 50 VVRSIRARQIVDSRGNPTVEVDLVAGDGRLHRSAVPSGASTGIYEALELRDGDGAAYGGK 109
Query: 308 GVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXX 487
GVL A++NINE+IAP+L ++V Q ++D +ML +DGT NKSKLGANAILGVSL
Sbjct: 110 GVLNAVRNINEVIAPKLV--GVDVRNQSDVDAIMLDIDGTPNKSKLGANAILGVSLSVCR 167
Query: 488 XXXXXXNVPLYKHLADLAGNNDIVLPVPAFNVING 592
VPLYKH+ +LAG ++V+PVPAFNVING
Sbjct: 168 AGAGAKEVPLYKHIQELAGTKELVMPVPAFNVING 202
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3
Query: 591 GGSHAGNKLAMQEFMIFPTGASTFSE 668
GGSHAGN LAMQEFM+ P GAS+FSE
Sbjct: 202 GGSHAGNNLAMQEFMLLPVGASSFSE 227
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 170 bits (414), Expect = 7e-43
Identities = 96/160 (60%), Positives = 113/160 (70%), Gaps = 7/160 (4%)
Frame = +2
Query: 134 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKG 310
I S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKG
Sbjct: 5 IVSVKARQIFDSRGNPTVEVDVCCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKG 63
Query: 311 VLTAIKNINELIAPELTKANLEVTQQREIDELMLK-LDGTEN-----KSKLGANAILGVS 472
V A+ N+N +IAP L + T Q E+D M++ LDGT+N K KLGANAIL VS
Sbjct: 64 VSKAVDNVNSVIAPALI--GKDPTSQAELDNFMVQQLDGTKNEWGWCKQKLGANAILAVS 121
Query: 473 LXXXXXXXXXXNVPLYKHLADLAGNNDIVLPVPAFNVING 592
L +PLY+H+A+LAGN +VLPVPAFNVING
Sbjct: 122 LAICKAGAIIKKIPLYQHIANLAGNKQLVLPVPAFNVING 161
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/27 (81%), Positives = 24/27 (88%), Gaps = 1/27 (3%)
Frame = +3
Query: 591 GGSHAGNKLAMQ-EFMIFPTGASTFSE 668
GGSHAGNKLAMQ EFMI PTGA++F E
Sbjct: 161 GGSHAGNKLAMQAEFMILPTGAASFKE 187
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 163 bits (396), Expect = 1e-40
Identities = 94/167 (56%), Positives = 115/167 (68%), Gaps = 10/167 (5%)
Frame = +2
Query: 122 LKMVIKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEY 298
+ + I+S+KARQIFDSRGNPTVEVD+ G F R AVPSGASTG++EALELRD S+Y
Sbjct: 1 MAVTIQSVKARQIFDSRGNPTVEVDVGLSDGSFARGAVPSGASTGIYEALELRDG-GSDY 59
Query: 299 HGKGVLTAIKNINELIAPELTKANLEVTQQREIDELML-KLDGTEN-----KSKLGANAI 460
GKGVL A+ N+N +I P L + T+Q +ID M+ +LDGT N K KLGANAI
Sbjct: 60 LGKGVLKAVSNVNTIIGPAL--IGKDPTEQVDIDNFMVQQLDGTSNNWGWCKQKLGANAI 117
Query: 461 LGVSLXXXXXXXXXXNVPLY---KHLADLAGNNDIVLPVPAFNVING 592
L VSL +PLY +H+A+LAGN +VLPVPAFNVING
Sbjct: 118 LAVSLAVCKAGAMVKKIPLYQKLQHIANLAGNKTLVLPVPAFNVING 164
Score = 31.5 bits (68), Expect(2) = 5e-04
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 618 AMQEFMIFPTGASTFSE 668
A+QEFMI PTGAS+F E
Sbjct: 199 AVQEFMILPTGASSFKE 215
Score = 29.5 bits (63), Expect(2) = 5e-04
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3
Query: 591 GGSHAGNKLAMQ 626
GGSHAGNKLAMQ
Sbjct: 164 GGSHAGNKLAMQ 175
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 132 bits (319), Expect = 2e-31
Identities = 78/137 (56%), Positives = 93/137 (67%), Gaps = 7/137 (5%)
Frame = +2
Query: 134 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKG 310
I+S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKG
Sbjct: 5 IQSVKARQIFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKG 63
Query: 311 VLTAIKNINELIAPELTKANLEVTQQREIDELML-KLDGTEN-----KSKLGANAILGVS 472
VL A+ N+N +I P L + T+Q ID M+ +LDGT+N K KLGANAIL VS
Sbjct: 64 VLKAVDNVNSIIGPAL--IGKDPTEQTVIDNFMVQQLDGTKNEWGWCKQKLGANAILAVS 121
Query: 473 LXXXXXXXXXXNVPLYK 523
L +PLY+
Sbjct: 122 LALCKAGAIIKKIPLYQ 138
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +3
Query: 624 QEFMIFPTGASTFSE 668
QEFMI PTGAS+F E
Sbjct: 138 QEFMILPTGASSFKE 152
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 105 bits (252), Expect = 3e-23
Identities = 56/154 (36%), Positives = 87/154 (56%)
Frame = +2
Query: 131 VIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKG 310
VI S++ARQI D RG P VEV L T + RA+ + + A +RD K + +
Sbjct: 46 VITSVRARQILDGRGEPAVEVSLHTNKAVHRASAAAADAPEGAAADAVRDAEKRKLLARA 105
Query: 311 VLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXX 490
V A++ IN+ ++ L ++ QQ +ID+ ++ LD +K+++G N++L VS+
Sbjct: 106 VADAVRVINDKVSEALV--GMDPQQQSQIDQAIMDLDKAHHKAEIGVNSMLAVSIAACKA 163
Query: 491 XXXXXNVPLYKHLADLAGNNDIVLPVPAFNVING 592
VPLYKH+A+L G + LP+PA VING
Sbjct: 164 GAAEKEVPLYKHIAELVGKSATTLPIPAITVING 197
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +3
Query: 591 GGSHAGNKLAMQEFMIFPTGASTFSE 668
GG+HAGN L +QE MI P GA F E
Sbjct: 197 GGTHAGNSLPIQEIMILPVGAKNFEE 222
>10_08_0039 -
14355746-14355772,14356713-14356772,14356873-14356944,
14357042-14357109,14357288-14357350,14357533-14357669,
14357950-14357987
Length = 154
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 47 PNLACKVQFC*IRITLNLRKSTSSVLKMVIKSIKARQIFDSRGNPTVEV 193
P+++C + + I L LRKST +V +++ ++ RQI + G T +
Sbjct: 79 PDISCMARRAKLTINLKLRKSTINVEQLI--HVRLRQILNFMGGKTAYI 125
>07_03_0627 - 20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 212 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPE 355
GL +A + SGA + A+E D+ YHG V +++N +IA +
Sbjct: 1124 GLVKAFMDSGAKAVISSAMEPPDSQSIVYHGMEVNGSLENGKFVIADD 1171
>01_01_0796 + 6190931-6192745
Length = 604
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/75 (22%), Positives = 36/75 (48%)
Frame = +2
Query: 212 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQR 391
GLF+ A TG A+ + D +S++H G T ++ ++ ++ +A E
Sbjct: 29 GLFKCASDLSILTGASVAVVIEDQNRSKFHAVGTPTVQAVVDAALSSDVEEAAAEARPVA 88
Query: 392 EIDELMLKLDGTENK 436
+ ++LM ++ E +
Sbjct: 89 D-EQLMERIAPLERE 102
>09_06_0040 -
20432008-20432091,20432152-20432229,20432322-20432941,
20433042-20433108,20433276-20433291,20433781-20433887,
20433989-20434037,20435059-20435142,20435288-20435384,
20435914-20435985,20436075-20436435,20437864-20438259
Length = 676
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 575 KLVQVEQCHYFQPNQPSACTAEHSSWQHQ 489
+L+ V C++ +QP+AC+A+ S Q Q
Sbjct: 337 RLLPVASCYWPMKSQPTACSAQESLEQEQ 365
>07_03_0482 +
18589573-18589728,18589889-18590065,18590518-18590688,
18590913-18591029,18591614-18591742,18592210-18592311,
18592412-18592498,18592585-18592638,18594880-18595016,
18595181-18595235,18596133-18596188,18596275-18596334,
18596442-18596529,18596634-18597371,18597451-18597511,
18598301-18598403,18599180-18599311,18599393-18599477
Length = 835
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 310 SLAMIFTLDVISQFKS-FMNTSGCTRGYSCPEQAKLC 203
SLA+ +DV+ + S + + + CT+G+ P +LC
Sbjct: 658 SLALPVAMDVVDEILSNYKSNAVCTKGHQFPRGNRLC 694
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,647,366
Number of Sequences: 37544
Number of extensions: 298520
Number of successful extensions: 658
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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