Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4643
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.1  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   8.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.0  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 542 QPNQPSACTAE 510
           QPN+PS CT E
Sbjct: 5   QPNRPSYCTWE 15


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 319 RNQKYQ*TDCS*TYQ 363
           RN++Y   DC  TYQ
Sbjct: 113 RNEEYTGDDCQKTYQ 127


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 246 DAPEGTAARNKPSSVTRSTSTVGLPRESKI 157
           D P  +A+ N+  + +  TST     E+KI
Sbjct: 271 DRPPASASSNEHEAESEHTSTPNFLSEAKI 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,833
Number of Sequences: 438
Number of extensions: 3262
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)