Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4642
         (750 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061115-1|AAL28663.1|  299|Drosophila melanogaster LD09945p pro...   225   4e-59
AL009191-3|CAA15685.1|  299|Drosophila melanogaster EG:39E1.2 pr...   225   4e-59
AE014298-303|AAF45700.1|  299|Drosophila melanogaster CG3587-PA ...   225   4e-59
BT023711-1|AAY85111.1|  307|Drosophila melanogaster GH25024p pro...    33   0.42 
AE014296-2269|AAF49823.2|  307|Drosophila melanogaster CG10222-P...    33   0.42 
X68130-1|CAA48237.1|  943|Drosophila melanogaster protein ( D.me...    33   0.55 
AY052144-1|AAK93568.1|  947|Drosophila melanogaster SD10334p pro...    29   8.9  
AY052107-1|AAK93531.1|  292|Drosophila melanogaster SD05444p pro...    29   8.9  
AJ564676-1|CAD92830.1|  122|Drosophila melanogaster gag protein ...    29   8.9  
AJ564675-1|CAD92829.1|  120|Drosophila melanogaster gag protein ...    29   8.9  
AE014298-2892|AAF48985.2|  292|Drosophila melanogaster CG12788-P...    29   8.9  
AE014297-693|AAF54185.1|  947|Drosophila melanogaster CG2708-PA ...    29   8.9  

>AY061115-1|AAL28663.1|  299|Drosophila melanogaster LD09945p
           protein.
          Length = 299

 Score =  225 bits (551), Expect = 4e-59
 Identities = 117/244 (47%), Positives = 158/244 (64%), Gaps = 14/244 (5%)
 Frame = +1

Query: 22  MPLIIICGTPVSGKTTRAKELKQFFEEKHGKTVEIVSEDEAIAKLGYEKNSMFLDSQKEK 201
           MPL++I G P SGK+TRA++L+  F E+ G+ V ++SE+EA+ K G+ KNS   DSQKEK
Sbjct: 1   MPLVVITGLPASGKSTRARQLRDHFVER-GRKVHLISENEAVPKAGFGKNSHTGDSQKEK 59

Query: 202 RVRGYLKSEAIRLIGKDNVVILDGSNYIKGYRYELYCASKASKSTQCTIYTLRNHEEAWQ 381
            VR  LKSEA R + ++++VILD  NYIKGYRYELYC SK S++TQCT++T    EEAW 
Sbjct: 60  VVRSDLKSEASRHLNQEDLVILDAGNYIKGYRYELYCMSKVSRTTQCTVFTCIPQEEAWT 119

Query: 382 ANQKRIS-------------TDNSD-QYTEEVFNALTRLRFEEPNSNNRWDSPLFTVLPT 519
            N +R +              DNSD  YT E F+AL + R+EEP SNNRWDSPL  VLP 
Sbjct: 120 FNSQRTAPDELPGDSERVQPVDNSDVPYTRETFDALCQ-RYEEPQSNNRWDSPLVVVLPK 178

Query: 520 DNIDLENIYKVLFEKKXXXXXXXXXXXXXXXTNFLYEVDKTTQDICKQILGSKTVELGRR 699
           D +D+E IYK L+E +               TN+L+E+DK  Q I K+ILG+  ++   +
Sbjct: 179 DTLDMEAIYKALYESQPLPPNQSTYNAPLGTTNYLFELDKIVQAIIKEILGAVKIKAFGQ 238

Query: 700 SQVP 711
            ++P
Sbjct: 239 LRIP 242


>AL009191-3|CAA15685.1|  299|Drosophila melanogaster EG:39E1.2
           protein.
          Length = 299

 Score =  225 bits (551), Expect = 4e-59
 Identities = 117/244 (47%), Positives = 158/244 (64%), Gaps = 14/244 (5%)
 Frame = +1

Query: 22  MPLIIICGTPVSGKTTRAKELKQFFEEKHGKTVEIVSEDEAIAKLGYEKNSMFLDSQKEK 201
           MPL++I G P SGK+TRA++L+  F E+ G+ V ++SE+EA+ K G+ KNS   DSQKEK
Sbjct: 1   MPLVVITGLPASGKSTRARQLRDHFVER-GRKVHLISENEAVPKAGFGKNSHTGDSQKEK 59

Query: 202 RVRGYLKSEAIRLIGKDNVVILDGSNYIKGYRYELYCASKASKSTQCTIYTLRNHEEAWQ 381
            VR  LKSEA R + ++++VILD  NYIKGYRYELYC SK S++TQCT++T    EEAW 
Sbjct: 60  VVRSDLKSEASRHLNQEDLVILDAGNYIKGYRYELYCMSKVSRTTQCTVFTCIPQEEAWT 119

Query: 382 ANQKRIS-------------TDNSD-QYTEEVFNALTRLRFEEPNSNNRWDSPLFTVLPT 519
            N +R +              DNSD  YT E F+AL + R+EEP SNNRWDSPL  VLP 
Sbjct: 120 FNSQRTAPDELPGDSERVQPVDNSDVPYTRETFDALCQ-RYEEPQSNNRWDSPLVVVLPK 178

Query: 520 DNIDLENIYKVLFEKKXXXXXXXXXXXXXXXTNFLYEVDKTTQDICKQILGSKTVELGRR 699
           D +D+E IYK L+E +               TN+L+E+DK  Q I K+ILG+  ++   +
Sbjct: 179 DTLDMEAIYKALYESQPLPPNQSTYNAPLGTTNYLFELDKIVQAIIKEILGAVKIKAFGQ 238

Query: 700 SQVP 711
            ++P
Sbjct: 239 LRIP 242


>AE014298-303|AAF45700.1|  299|Drosophila melanogaster CG3587-PA
           protein.
          Length = 299

 Score =  225 bits (551), Expect = 4e-59
 Identities = 117/244 (47%), Positives = 158/244 (64%), Gaps = 14/244 (5%)
 Frame = +1

Query: 22  MPLIIICGTPVSGKTTRAKELKQFFEEKHGKTVEIVSEDEAIAKLGYEKNSMFLDSQKEK 201
           MPL++I G P SGK+TRA++L+  F E+ G+ V ++SE+EA+ K G+ KNS   DSQKEK
Sbjct: 1   MPLVVITGLPASGKSTRARQLRDHFVER-GRKVHLISENEAVPKAGFGKNSHTGDSQKEK 59

Query: 202 RVRGYLKSEAIRLIGKDNVVILDGSNYIKGYRYELYCASKASKSTQCTIYTLRNHEEAWQ 381
            VR  LKSEA R + ++++VILD  NYIKGYRYELYC SK S++TQCT++T    EEAW 
Sbjct: 60  VVRSDLKSEASRHLNQEDLVILDAGNYIKGYRYELYCMSKVSRTTQCTVFTCIPQEEAWT 119

Query: 382 ANQKRIS-------------TDNSD-QYTEEVFNALTRLRFEEPNSNNRWDSPLFTVLPT 519
            N +R +              DNSD  YT E F+AL + R+EEP SNNRWDSPL  VLP 
Sbjct: 120 FNSQRTAPDELPGDSERVQPVDNSDVPYTRETFDALCQ-RYEEPQSNNRWDSPLVVVLPK 178

Query: 520 DNIDLENIYKVLFEKKXXXXXXXXXXXXXXXTNFLYEVDKTTQDICKQILGSKTVELGRR 699
           D +D+E IYK L+E +               TN+L+E+DK  Q I K+ILG+  ++   +
Sbjct: 179 DTLDMEAIYKALYESQPLPPNQSTYNAPLGTTNYLFELDKIVQAIIKEILGAVKIKAFGQ 238

Query: 700 SQVP 711
            ++P
Sbjct: 239 LRIP 242


>BT023711-1|AAY85111.1|  307|Drosophila melanogaster GH25024p
           protein.
          Length = 307

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +1

Query: 34  IICGTPVSGKTTRAKELKQFFEEKHGKTVEIVSEDEAIAKLGYE 165
           +I G P SGKTT   E  +F+ E  G+ V +V+ D A   + YE
Sbjct: 19  LIIGPPGSGKTTYCGEALKFYREL-GRQVGVVNLDPANENMSYE 61


>AE014296-2269|AAF49823.2|  307|Drosophila melanogaster CG10222-PA
           protein.
          Length = 307

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +1

Query: 34  IICGTPVSGKTTRAKELKQFFEEKHGKTVEIVSEDEAIAKLGYE 165
           +I G P SGKTT   E  +F+ E  G+ V +V+ D A   + YE
Sbjct: 19  LIIGPPGSGKTTYCGEALKFYREL-GRQVGVVNLDPANENMSYE 61


>X68130-1|CAA48237.1|  943|Drosophila melanogaster protein (
           D.melanogaster DNA sequenceof Het-A transposable element
           9D4. ).
          Length = 943

 Score = 32.7 bits (71), Expect = 0.55
 Identities = 21/88 (23%), Positives = 40/88 (45%)
 Frame = +1

Query: 238 LIGKDNVVILDGSNYIKGYRYELYCASKASKSTQCTIYTLRNHEEAWQANQKRISTDNSD 417
           L   D V+ +  S   +   + L  +  ++ S    I T+  +++   +NQ  IS  NS 
Sbjct: 32  LFSDDEVLSISSSPEQRSSPFYLNISPMSNGSDNSQINTIIFNQKKLPSNQANISLKNSS 91

Query: 418 QYTEEVFNALTRLRFEEPNSNNRWDSPL 501
               ++ ++L+  + E  N+NN    PL
Sbjct: 92  GAAIKIVSSLSHKKKENSNTNNAQKDPL 119


>AY052144-1|AAK93568.1|  947|Drosophila melanogaster SD10334p
           protein.
          Length = 947

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +1

Query: 262 ILDGSNYIKGYRYELYCASKASKSTQCTIYTLRNHEEAWQANQKRISTDNSDQYTEE 432
           +LD  + ++ Y+YE       S ST  ++   R +E  +    K   TD  D+Y ++
Sbjct: 335 LLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKD 391


>AY052107-1|AAK93531.1|  292|Drosophila melanogaster SD05444p
           protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 19/86 (22%), Positives = 39/86 (45%)
 Frame = +1

Query: 253 NVVILDGSNYIKGYRYELYCASKASKSTQCTIYTLRNHEEAWQANQKRISTDNSDQYTEE 432
           ++++ D + Y +  RY+LY   + S      IY   + +   QAN  R    ++ +   +
Sbjct: 97  HLILCDDNFYYRSMRYKLYQLCRDSGCIFGQIYMASSLDSCLQANSLR---SDATRVPVD 153

Query: 433 VFNALTRLRFEEPNSNNRWDSPLFTV 510
           V   +   R E P+++  W+    T+
Sbjct: 154 VVRQMNE-RLEVPDTSEAWERNSLTL 178


>AJ564676-1|CAD92830.1|  122|Drosophila melanogaster gag protein
           protein.
          Length = 122

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 331 STQCTIYTLRNHEEAWQANQKRISTDNSDQYTEEVFNALTRLRFEEPNSNNRWDSPL 501
           S    I T+  +++   +NQ  IS  NS     ++ ++L+  + E  N+NN    PL
Sbjct: 5   SDNSQINTIIFNQKKLPSNQANISLKNSSGAAIKIVSSLSHKKKENTNTNNAQKDPL 61


>AJ564675-1|CAD92829.1|  120|Drosophila melanogaster gag protein
           protein.
          Length = 120

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 331 STQCTIYTLRNHEEAWQANQKRISTDNSDQYTEEVFNALTRLRFEEPNSNNRWDSPL 501
           S    I T+  +++   +NQ  IS  NS     ++ ++L+  + E  N+NN    PL
Sbjct: 5   SDNSQINTIIFNQKKLPSNQANISLKNSSGAAIKIVSSLSHKKKENTNTNNAQKDPL 61


>AE014298-2892|AAF48985.2|  292|Drosophila melanogaster CG12788-PA,
           isoform A protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 19/86 (22%), Positives = 39/86 (45%)
 Frame = +1

Query: 253 NVVILDGSNYIKGYRYELYCASKASKSTQCTIYTLRNHEEAWQANQKRISTDNSDQYTEE 432
           ++++ D + Y +  RY+LY   + S      IY   + +   QAN  R    ++ +   +
Sbjct: 97  HLILCDDNFYYRSMRYKLYQLCRDSGCIFGQIYMASSLDSCLQANSLR---SDATRVPVD 153

Query: 433 VFNALTRLRFEEPNSNNRWDSPLFTV 510
           V   +   R E P+++  W+    T+
Sbjct: 154 VVRQMNE-RLEVPDTSEAWERNSLTL 178


>AE014297-693|AAF54185.1|  947|Drosophila melanogaster CG2708-PA
           protein.
          Length = 947

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +1

Query: 262 ILDGSNYIKGYRYELYCASKASKSTQCTIYTLRNHEEAWQANQKRISTDNSDQYTEE 432
           +LD  + ++ Y+YE       S ST  ++   R +E  +    K   TD  D+Y ++
Sbjct: 335 LLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKD 391


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,082,873
Number of Sequences: 53049
Number of extensions: 614650
Number of successful extensions: 1713
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1707
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)