Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4641
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 38 0.002
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 33 0.055
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 31 0.13
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 31 0.22
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 30 0.29
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 30 0.29
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 30 0.29
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.29
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 30 0.39
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 30 0.39
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.51
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.68
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.90
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 29 0.90
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 29 0.90
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.90
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 1.2
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.2
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 27 2.1
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 27 2.1
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.7
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 27 2.7
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 27 3.6
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 27 3.6
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 4.8
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 26 6.3
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 6.3
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 6.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.4
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 8.4
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 25 8.4
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 25 8.4
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 8.4
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +2
Query: 116 QEGKLHLRKVTSTEPKESPV---KKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEES 286
++ K ++ +S EP + V KKS K+ ++ES + + ++ S +E+ +E
Sbjct: 52 KKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSSESE 111
Query: 287 NDASENGDATEKKETGVK 340
+ +SE+ + ++E VK
Sbjct: 112 SSSSESSSSESEEEVIVK 129
Score = 30.3 bits (65), Expect = 0.29
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 149 STEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESND-ASENGDATEKK 325
S+ S +S + E+ E T+E E S + D+E S+D +SE+GD+
Sbjct: 166 SSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSS 225
Query: 326 ET 331
++
Sbjct: 226 DS 227
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 32.7 bits (71), Expect = 0.055
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +2
Query: 140 KVTSTEPKESPV---KKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 310
K+T+ E + SPV +SP +G EN D + E+ D E N+ E D
Sbjct: 51 KITTNEKQSSPVDSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDEDNVEENE--EEAD 108
Query: 311 ATEKKE 328
A E++E
Sbjct: 109 ANEEEE 114
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 167 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDA 313
+P+K+ PAK ++ + A SPA NG N+AS + A
Sbjct: 113 TPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNGSVFSGNEASPSSRA 161
Score = 29.5 bits (63), Expect = 0.51
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 231 PFSLPLLSAASTFLAGDFLTGDSFGSVEVTFLRCNFPS 118
P+S P+L++ + L G +L+ S + V L NFPS
Sbjct: 276 PYSGPILASTAPTLDGSYLSNPSNSNPAVMSLSSNFPS 313
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 30.7 bits (66), Expect = 0.22
Identities = 13/57 (22%), Positives = 34/57 (59%)
Frame = +2
Query: 146 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDAT 316
+S+E +S S ++ +++ + + + ++ +DS +++ D+ ES +SE+ D+T
Sbjct: 247 SSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDS-ESESSSEDSDST 302
Score = 29.9 bits (64), Expect = 0.39
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +2
Query: 146 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKK 325
+ +E + S + +ES G+D + S +E+ + E ND+S + +E +
Sbjct: 133 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE 192
Query: 326 ET 331
+
Sbjct: 193 SS 194
Score = 29.9 bits (64), Expect = 0.39
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +2
Query: 146 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKK 325
+ +E + S + +ES G+D + S +E+ + E ND+S + +E +
Sbjct: 187 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE 246
Query: 326 ET 331
+
Sbjct: 247 SS 248
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 30.3 bits (65), Expect = 0.29
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +2
Query: 95 NGRRSRRQEGKLHLRKVTSTEPKESPVK--KSPAKKVEAAESNGKENGTDEAPEDSPAEN 268
+G S G L TS E P K K ++KVE E+ + +EA ++ ++
Sbjct: 362 SGTSSISSSGILESSPATSISVDE-PQKDSKDDSEKVEK-ETEVERKEENEAEAEAVFDD 419
Query: 269 GDA--EESNDASENGDATEKKETGVKRKSV 352
+A EE A N TEKKET +K +V
Sbjct: 420 WEAALEEPEVAENNEVVTEKKETDIKSDAV 449
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 30.3 bits (65), Expect = 0.29
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 149 STEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN-GDAEESNDASENGDAT 316
++EPK + KSP +K + ++ T++ DS +N ++S DA + AT
Sbjct: 981 TSEPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMDNVATVDKSTDAVDTSTAT 1037
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 30.3 bits (65), Expect = 0.29
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 200 EAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 310
E++E + ++N TDEA ED+ + D + S + D
Sbjct: 355 ESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSD 391
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 30.3 bits (65), Expect = 0.29
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 161 KESPVKKSPAK-KVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGV 337
K PV++ P K + ++ NG+E T + E++ + G ++E N+A+ + + GV
Sbjct: 123 KARPVQEQPIKDRKKSKNKNGEEPETSTSVENAESAKGSSDE-NEANTATAPSSNEANGV 181
Query: 338 KRK 346
+K
Sbjct: 182 DKK 184
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 29.9 bits (64), Expect = 0.39
Identities = 17/62 (27%), Positives = 35/62 (56%)
Frame = +2
Query: 137 RKVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDAT 316
+ V ++E ES + S ++ E ES +DE+ +S +E+ ++EE +++ E D +
Sbjct: 73 KAVAASEDSESDSESS--EEEEETESEEDSEVSDESESESESES-ESEEESESEEESDES 129
Query: 317 EK 322
E+
Sbjct: 130 ER 131
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 29.9 bits (64), Expect = 0.39
Identities = 16/73 (21%), Positives = 27/73 (36%)
Frame = +2
Query: 113 RQEGKLHLRKVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESND 292
+ +GK H +S +E+ K PA V A N + T S +
Sbjct: 25 KSKGKSHKSNTSSIHERENTAAKGPASNVRPARPNVSTSSTSNEVRKSVPVGNPTVHTKT 84
Query: 293 ASENGDATEKKET 331
S + A++ + T
Sbjct: 85 GSSSSPASKMRNT 97
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 29.5 bits (63), Expect = 0.51
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +2
Query: 143 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 310
+ +EP + K+ K + +E+ + G D+ E+ ++ D +E D E+ +
Sbjct: 169 IQPSEPHDVDTSKNGLSKKQHSEAQPEVQGNDDEVEEEDDDDDDEDEDEDEDEDNN 224
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.1 bits (62), Expect = 0.68
Identities = 21/86 (24%), Positives = 37/86 (43%)
Frame = +2
Query: 98 GRRSRRQEGKLHLRKVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDA 277
G+RS +++ L L + S ESP P K +A ++ K N D+ +
Sbjct: 4 GKRSTQRDADLELESLQSEIESESP---QPVTKSKAKKNKKKLNKASAFNSDNDSNYDLK 60
Query: 278 EESNDASENGDATEKKETGVKRKSVA 355
E ++ E +KK + +K+ A
Sbjct: 61 PEDDEVDEEVVPVKKKPSKKSKKAKA 86
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 170 PVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEE 283
PVKK P+KK + A++N E DE + E D+E+
Sbjct: 72 PVKKKPSKKSKKAKANAFEAFADEQSVEEEEEE-DSEK 108
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 28.7 bits (61), Expect = 0.90
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 179 KSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKR 343
K P+ K + S+ +NG+D DS + N SN +EN +A ++K + R
Sbjct: 963 KDPSPKSASESSSFYQNGSDIDDNDSNSSN----TSNHTTENANAQQRKLEDLNR 1013
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 28.7 bits (61), Expect = 0.90
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -1
Query: 661 QVLLQVKFNTQCIYYYINLNLNQTQKSSTLHSMRLSVWV*YICRSGICGC 512
++LL C ++ L+LN+ + L +R + ++ SGICGC
Sbjct: 93 KLLLDAFEKKGCDVHFYALDLNEAELQKGLQELRQTTNYQHVKVSGICGC 142
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 28.7 bits (61), Expect = 0.90
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Frame = +2
Query: 155 EPKESPVKKSPAKKVEAAESNGKENGTDEAPED------SPAENGDAEESNDASENGDAT 316
E E + + P K E AE + K+ E E S + NG ++ A E G+ T
Sbjct: 183 EQAEEEILEKPVPKDEVAEKHSKDKLKKEEKEKKTAVDVSDSVNGKKRKTEPAGE-GEQT 241
Query: 317 EKKETGVK 340
EKK K
Sbjct: 242 EKKSKSTK 249
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.7 bits (61), Expect = 0.90
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +2
Query: 149 STEPKESPVKKSPAKKVE-----AAESNGKENGTDEAPEDSPAENGDAEESNDASENGDA 313
S P++SPV+ V+ +ESN K +GT+ + +P NG+ EE N+ G
Sbjct: 175 SFAPQKSPVENETETNVDNGDTKISESNEK-SGTEVEQQSAPNSNGN-EEVNNLEPVGQN 232
Query: 314 TEKKE 328
K+E
Sbjct: 233 ESKQE 237
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 206 AESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 358
+ES ++ DE E+ EN D + D +EN + + E G S A+
Sbjct: 241 SESYERDEDVDEEEEEDDDENNDEGDDEDENENDEL--RSENGSPNPSAAV 289
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 221 KENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 358
+EN +D E+S + AE A E TE++E K++ + L
Sbjct: 625 EENSSDNEMEESSGSSVTAENEESADEVDFQTEREENARKKEELRL 670
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = +2
Query: 155 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETG 334
E +S + S + +A S+ +E ++E ED+ E+G +E + E+G+ ++ E
Sbjct: 939 EGDDSVEEVSEYEASDADPSDEEEEESEEYSEDASEEDGYSESEVEDEESGEDWDELERK 998
Query: 335 VKRKSVALD 361
+++ D
Sbjct: 999 ARQEDAKHD 1007
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 131 HLRKVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 268
H K E +ESP+K P KK + E T + SP E+
Sbjct: 884 HKVKHAKVETRESPMKNKPTKKQHKRAFSMFERPTSQKAPLSPVES 929
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 140 KVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENG 307
+V++ EP+ PVK+ V ++ G+ + TD +P E + S + E G
Sbjct: 389 EVSANEPQPRPVKED----VPKSQVGGETDTTDVINNSTPKEETEESPSTELPETG 440
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +2
Query: 104 RSRRQEGKLHLRKVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEE 283
RS+R+ + R + KE ++ AKK+ ES K+ A + + + A+E
Sbjct: 22 RSQRKATEKVDRALLLQRRKEKAKARAEAKKLAKKESKAKQESKVAAYDTGNSSDNIADE 81
Query: 284 SND 292
ND
Sbjct: 82 END 84
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 101 RRSRRQEGKLHLRKVTSTEPKESPVKKSPAKK 196
R+ RR+E R+ ++ ++P KK P+KK
Sbjct: 201 RQQRREENLKKRRESKKSKKGKAPKKKKPSKK 232
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 197 VEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 328
VE + NG + + ++ +DS ++ + ESND S + DA + +
Sbjct: 372 VEEIKKNGIQEDS-QSTDDSSKDDDNNSESNDMSPHNDAETRAD 414
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 585 RAQPFIV*GYQYGCNTFVGAGYVDVS*TLMGIDALQ 478
RA P ++ G N + + Y D MGIDAL+
Sbjct: 36 RAPPPVIDGSSVDANRIIRSDYADAVYCSMGIDALE 71
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +2
Query: 143 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASE---NGDA 313
+ ++ K SPV + A +N + + +SP + EE+N A + A
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANKQAKEMESKMSNSPTQKSKTEENNQAVRAILDASA 586
Query: 314 TEKKETGVKR 343
T +K+ + R
Sbjct: 587 TMEKQYDLHR 596
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 239 EAPEDSPAENGDAEESNDASENGDATEK 322
E PEDS E+G +E + D SE+G+ E+
Sbjct: 235 EPPEDS--EDGISEMNEDPSESGEMIEQ 260
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 6.3
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Frame = +2
Query: 161 KESPVKKSPAKKVEAAESNGKENG-------TDEAPEDSPAENGDAEESNDA-SENGDAT 316
K +PV A VE AE NG E+ + E ED A+ + +A E +
Sbjct: 403 KPAPVVAPAAPTVE-AEVNGVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKK 461
Query: 317 EKKETGVKRK 346
EKKE K+K
Sbjct: 462 EKKEKKEKKK 471
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 6.3
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 158 PKES-PVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG-DAEESNDASENGDAT-EKKE 328
PK S P +PA V A +S NG E+ ENG D SND+ +G E+ E
Sbjct: 396 PKSSFPTSSTPAS-VGAEKSEETSNGNKSEQEEK--ENGNDETRSNDSLVSGKGKGEENE 452
Query: 329 TGV 337
V
Sbjct: 453 DSV 455
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 161 KESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 289
+E +S + EA E NG + S EN D+EE N
Sbjct: 3939 EEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEEN 3981
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 254 SPAENGDAEESNDASENGDAT 316
SP NGD E +ENG+ T
Sbjct: 9 SPTTNGDKNEDGYPAENGEGT 29
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 248 EDSPAENGDAEESNDASENGDATEKKETGVKRKS 349
E+ E+ E NDA+E G + +K+ K+KS
Sbjct: 22 ENDVVEDDGKVEENDAAEEGASNGEKKKKKKKKS 55
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 173 VKKSPAKKVEAAESNGKE--NGTDEAPEDSPAENGDAEESNDASENGDATEKKETG 334
++K+ AKK E G DE P + + G+A + N+ E + KK+ G
Sbjct: 103 LEKAYAKKYAPIFKRRSEVVRGADE-PTEEEIKKGEAADENEKKEPTSSESKKQEG 157
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +2
Query: 182 SPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVALD 361
+P K+ E AE+ +D + DAEE S+ G T KKE +++ AL+
Sbjct: 3 NPKKRAEKAEA------AKSRKQDEEKKKKDAEEDEKWSK-GVKTNKKEQEAEKRKAALE 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,485
Number of Sequences: 5004
Number of extensions: 46452
Number of successful extensions: 212
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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