Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4640
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    30   0.40 
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    27   3.8  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   5.0  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   6.6  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.7  

>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 22/79 (27%), Positives = 41/79 (51%)
 Frame = +2

Query: 173 LRYVETLRSKREITLVDGVTLDSKGSPRSARALEPLPEEPKAREAQVESRLVDGVADFLE 352
           LR +E+L      TL+    + + G+P   + +   PEE +  +A+V  R V+G  DF+ 
Sbjct: 172 LRVIESLNMIAPGTLLVADNIITPGAPEYHKYVNMSPEERRGYQAKV--RNVNGF-DFIG 228

Query: 353 NYVVQFKLPSSAVEGMRRS 409
            + + +K  +   EG+ R+
Sbjct: 229 RWDLIYKTETKEFEGVIRN 247


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 269 LEPLPEEPKAREAQVESRLVDGVADFLENYVV 364
           L+ LP E   RE  VE  L + VAD ++ YV+
Sbjct: 249 LDKLPWEDVRREMVVEKGLKEEVADKIKEYVL 280


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = -1

Query: 240 LSRVTPSTSVISLLDLKVSTYLKAFSLRHRVTSPSTHSLTTPRTLPRMFGSESCSAAGIA 61
           LSR   ++S  +   + V +     S    + +    S++TP   P  F S + +   + 
Sbjct: 215 LSRAASNSSTSARAGISVDSLFGKRSAAQAMATV-VPSVSTPGGTPPRFASPALTVESMV 273

Query: 60  HATPITIKTTR 28
           HA P T  ++R
Sbjct: 274 HAAPSTTTSSR 284


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 83  LVRQQASPTPRRSPLKRPDTSYR 15
           L   Q+ PTPR  P  +P  SY+
Sbjct: 624 LETSQSPPTPRTKPSHKPPVSYK 646


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +2

Query: 218 VDGVTLDSK-----GSPRSARALEPLPEEPKAREAQVESRLVDGVADFLENYVVQFKLPS 382
           VDG+ LDS       +P+      P+P    A   Q    L++ +  F++    ++ LP+
Sbjct: 283 VDGIQLDSNFTIESENPKIPTHTHPIPIFEIASSEQTCKNLLEKLIRFIDRASTKYSLPN 342

Query: 383 SAVE 394
            A +
Sbjct: 343 DAAQ 346


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 207  SLLDLKVSTYLKAFSLRHRVTSPSTHSLTTPRTLP 103
            SL+   + T + A  + H   +PS  S+ TP+T P
Sbjct: 2947 SLILQDLPTAISALKITHVDLTPSLASILTPKTAP 2981


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,701
Number of Sequences: 5004
Number of extensions: 43501
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)