Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4640
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   7.1  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 510 PKNRGMRAMIFSLAMAKRGRSCLIFFF-LPRASSNDLLMPSTAEDGSLNCTT 358
           P+NR     +++LA  + G + L+F F +     N L++ +   +  L+  T
Sbjct: 29  PQNRSQEEDLWNLATDRAGLAILLFLFSVATVFGNTLVILAVVRERYLHTAT 80


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 587 KKLLASKHTETSYEVVAHPHHEEHYASSGH 676
           +KLLA K TE   ++ A   H++    + H
Sbjct: 404 EKLLAFKMTEQQQQMQAQQQHQQQQQQTQH 433


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 638 HPHHEEHYASSGH 676
           H HH  H+A  GH
Sbjct: 280 HVHHANHHAILGH 292


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +2

Query: 599 ASKHTETSYEVV----AHPHHEEHYASSGHGWGRSIDDAPNMAYSA 724
           A++ T + Y  V    AH HH++  A +   +G +    P    +A
Sbjct: 81  AARTTSSMYPYVSAAAAHHHHQQQQAVAAAAFGATSSMVPGFGSTA 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,937
Number of Sequences: 438
Number of extensions: 3075
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)