Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4639
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 229 2e-61
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 229 2e-61
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 44 1e-05
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 26 5.0
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 26 5.0
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 25 6.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 6.5
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr... 25 6.5
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 25 8.7
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 8.7
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 8.7
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 25 8.7
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 8.7
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 229 bits (560), Expect = 2e-61
Identities = 106/143 (74%), Positives = 123/143 (86%)
Frame = +1
Query: 85 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 264
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 265 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE*ND*VLVAGFGRKGHAVGDIPGVRF 444
QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ ND VL++GFGRKG A GDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120
Query: 445 KVVKVANVSLLALYKEKKERPRS 513
KVVKVA V L AL+ EKKE+PR+
Sbjct: 121 KVVKVAGVGLSALFHEKKEKPRA 143
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 229 bits (560), Expect = 2e-61
Identities = 106/143 (74%), Positives = 123/143 (86%)
Frame = +1
Query: 85 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 264
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 265 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE*ND*VLVAGFGRKGHAVGDIPGVRF 444
QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ ND VL++GFGRKG A GDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120
Query: 445 KVVKVANVSLLALYKEKKERPRS 513
KVVKVA V L AL+ EKKE+PR+
Sbjct: 121 KVVKVAGVGLSALFHEKKEKPRA 143
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 44.4 bits (100), Expect = 1e-05
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = +1
Query: 211 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE*ND*VLV 390
G+ +G+ V+ K+PNSA+RK RV+L G+ VTA++P G ++ + + VL+
Sbjct: 47 GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103
Query: 391 AGFGRKGHAVGDIPGVRFKVVK 456
G GR D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 384 YLVVLFDVV*AT-VTGDECGHFLSVLNELYTDAFADGR 274
Y+V LFD AT V G E GH L+ L + Y D AD R
Sbjct: 312 YVVNLFDTYYATKVLGFE-GHGLAFLLQKYCDYDADKR 348
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.8 bits (54), Expect = 5.0
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -2
Query: 606 HNIYYVLGFYIL*TYKQRASRQQVTYHNVHL*SWSLLFLFVESEERHVGYFYHLKTN--S 433
HN Y++ Y T K++ R +++HN W+ L F+ + YFY ++ S
Sbjct: 179 HNNPYIIRGYRFYTSKRKCFRSILSWHNETFNIWTHLSAFIVF-FAVLAYFYPSSSSWVS 237
Query: 432 GNVTDGV 412
NV++ +
Sbjct: 238 SNVSNRI 244
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 148 WADKEFKKAHMGTKWKANPFGGASHAKGIV 237
W D EF H K+ PF +H K V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 154 PPIAVHDGGSRAYAP 110
PP AV GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795
>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 510 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 388
SW L+++ V S+E+ GY L N+ D G+ ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.0 bits (52), Expect = 8.7
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Frame = -2
Query: 249 NFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYSSG----FTHL 82
+F+ + V ++++ + V L+FF LF+TV H+ R F L
Sbjct: 20 HFISSENCLVLLQALKINIYLCSEVHGLQFFTSIPLFSTVKHIRPYRPPGLDRDYLFVVL 79
Query: 81 DSTTPIGYGWEKKLIGLAIGQPP 13
+ T W++ + + PP
Sbjct: 80 NDDTYFSIYWDEDYQKVIVDHPP 102
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 444 KTNSGNVTDGVTFTTESRH*YLVVLFDV 361
+ NSGNV V F ++ H + FDV
Sbjct: 326 EANSGNVYSPVVFQKQNNHTNTIFTFDV 353
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 441 TNSGNVTDGVTFTTESRH*YLVVLFDV 361
+NSGNV V F ++ H + FDV
Sbjct: 247 SNSGNVYSPVVFQKQNNHTNTIFTFDV 273
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -3
Query: 392 ATST*SFYSMWFRQPS---RGTNAVTFFPFLMSCTRTHLRMA 276
++S F+S+WFRQ + AVT+F MS HL A
Sbjct: 154 SSSVSCFFSLWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEA 195
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 441 TNSGNVTDGVTFTTESRH*YLVVLFDV 361
+NSGNV V F ++ H + FDV
Sbjct: 247 SNSGNVYSPVVFQKQNNHTNTIFTFDV 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,553
Number of Sequences: 5004
Number of extensions: 58869
Number of successful extensions: 122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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